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3BT2

Structure of urokinase receptor, urokinase and vitronectin complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyCCD
DetectorADSC QUANTUM 315
Wavelength(s)1.0
Spacegroup nameP 1 21 1
Unit cell lengths52.096, 87.205, 124.274
Unit cell angles90.00, 94.31, 90.00
Refinement procedure
Resolution42.880 - 2.500
R-factor0.22993
Rwork0.229
R-free0.27170
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2fd6
RMSD bond length0.018
RMSD bond angle1.740
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareAMoRE
Refinement softwareREFMAC (5.3.0037)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.590
High resolution limit [Å]2.5002.500
Rmerge0.0770.356
Number of reflections38381
<I/σ(I)>24.12.8
Completeness [%]99.296
Redundancy5.34.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICRODIALYSIS7.52958% PEG 4000, 2.5% ethanol, 0.05% sodium azide, 50mM cacodylate pH 6.5, pH 7.5, MICRODIALYSIS, temperature 295K
1MICRODIALYSIS7.52958% PEG 4000, 2.5% ethanol, 0.05% sodium azide, 50mM cacodylate pH 6.5, pH 7.5, MICRODIALYSIS, temperature 295K
1MICRODIALYSIS7.52958% PEG 4000, 2.5% ethanol, 0.05% sodium azide, 50mM cacodylate pH 6.5, pH 7.5, MICRODIALYSIS, temperature 295K

219869

PDB entries from 2024-05-15

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