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2XKC

Structure of Nek2 bound to aminopyrazine compound 14

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I02
Synchrotron siteDiamond
BeamlineI02
Temperature [K]100
Detector technologyCCD
DetectorADSC CCD
Spacegroup nameC 1 2 1
Unit cell lengths100.110, 56.550, 73.610
Unit cell angles90.00, 127.96, 90.00
Refinement procedure
Resolution31.029 - 2.500
R-factor0.1891
Rwork0.187
R-free0.23500
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2wqo
RMSD bond length0.003
RMSD bond angle0.611
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]58.0302.640
High resolution limit [Å]2.5002.500
Rmerge0.1070.486
Number of reflections10970
<I/σ(I)>7.92.7
Completeness [%]97.196.3
Redundancy3.23.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
12-10% PEG8000, 100MM TRIS PH6.8

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PDB entries from 2024-10-30

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