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2Q7D

Crystal Structure of Human Inositol 1,3,4-Trisphosphate 5/6-kinase (ITPK1) in complex with AMPPNP and Mn2+

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.3
Synchrotron siteALS
Beamline5.0.3
Spacegroup nameP 21 21 21
Unit cell lengths63.157, 94.607, 130.583
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000 - 1.600
R-factor0.19593
Rwork0.194
R-free0.23594
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Selenomethionine derivative partially refined structure
RMSD bond length0.013
RMSD bond angle1.564
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwarePHASES
Refinement softwareREFMAC (5.2.0019)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.660
High resolution limit [Å]1.6001.600
Rmerge0.0470.510
Number of reflections95421
<I/σ(I)>24.12.3
Completeness [%]91.8
Redundancy2.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.62770.1M Na Citrate, 0.2M K/Na Tartrate, 2M (NH4)2SO4, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K

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PDB entries from 2024-10-09

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