2PD6
Structure of human hydroxysteroid dehydrogenase type 8, HSD17B8
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SLS BEAMLINE X10SA |
| Synchrotron site | SLS |
| Beamline | X10SA |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2007-01-22 |
| Detector | MARMOSAIC 225 mm CCD |
| Wavelength(s) | 1.00234 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 68.839, 62.429, 102.439 |
| Unit cell angles | 90.00, 99.22, 90.00 |
Refinement procedure
| Resolution | 46.000 - 2.000 |
| R-factor | 0.18616 |
| Rwork | 0.184 |
| R-free | 0.22667 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | Swissmodel based on pdb entries 1Q7B and 1EDO |
| RMSD bond length | 0.013 |
| RMSD bond angle | 1.354 |
| Data reduction software | HKL-2000 |
| Data scaling software | SCALEPACK |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 50.000 | 2.070 |
| High resolution limit [Å] | 2.000 | 2.000 |
| Rmerge | 0.117 | 0.759 |
| Number of reflections | 54998 | |
| Completeness [%] | 99.9 | 100 |
| Redundancy | 3.5 | 3.3 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 200 mM sodium fluoride, 20% PEG3350, 10% ethylene glycol plus 5mM NAD+, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K |
