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2OBO

Structure of HEPATITIS C VIRAL NS3 protease domain complexed with NS4A peptide and ketoamide SCH476776

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 17-ID
Synchrotron siteAPS
Beamline17-ID
Temperature [K]95
Detector technologyCCD
DetectorADSC QUANTUM 210
Wavelength(s)1.0
Spacegroup nameH 3 2
Unit cell lengths224.271, 224.271, 75.205
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution8.000 - 2.600
Rwork0.178
R-free0.29500
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)2o8m
RMSD bond length0.008
RMSD bond angle1.937
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareX-PLOR
Refinement softwareX-PLOR (98.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.660
High resolution limit [Å]2.6002.600
Number of reflections22055
<I/σ(I)>2.2
Completeness [%]99.099.3
Redundancy2.22.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP277The protein (NS3 complexed with KK-NS4a(21-39)-KK peptide) was at 12-15 mg/ml in 15 mM MES, pH 6.5 1 M NaCl 20 mM b-mercaptoethanol. Hanging Drops were formed by mixing 4:l protein solution with 4:l {0.75-1.0 M NaCl, 0.1M Na/K phosphate 0.1 M Mes, pH 5.8-6.1 20 mM b-mercaptoethanol} The drop was equilibrated the drops over 1 ml {(1.25-1.50 M) NaCl - 0.1M Na/K phosphate 0.1 M Mes, pH 5.6-5.8, 20 mM b-mercaptoethanol} , VAPOR DIFFUSION, HANGING DROP, temperature 277K

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PDB entries from 2024-07-10

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