1S8G
Crystal structure of Lys49-Phospholipase A2 from Agkistrodon contortrix laticinctus, fatty acid bound form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE D03B-MX1 |
Synchrotron site | LNLS |
Beamline | D03B-MX1 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2001-10-11 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.544 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 81.897, 81.897, 49.902 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 57.300 - 2.300 |
R-factor | 0.20663 |
Rwork | 0.205 |
R-free | 0.24700 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ppa |
RMSD bond length | 0.005 |
RMSD bond angle | 0.929 |
Data reduction software | MOSFLM |
Data scaling software | CCP4 ((SCALA)) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.1.24) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 57.300 | 2.410 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.118 | 0.382 * |
Total number of observations | 101833 * | |
Number of reflections | 7960 | |
<I/σ(I)> | 1.7 | |
Completeness [%] | 98.1 | 99.7 |
Redundancy | 6.2 | 6.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 291 | cacodylate, ammonium sulfate, PEG 8000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | PEG8000 | 30 (%(w/v)) | |
2 | 1 | reservoir | sodium cacodylate | 0.1 (M) | pH6.5 |
3 | 1 | reservoir | ammonium sulfate | 0.2 (M) | |
4 | 1 | drop | protein | 10 (mg/ml) |