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1PKE

Crystal Structure of E. coli purine nucleoside phosphorylase complexed with 2-fluoro-2'-deoxyadenosine and sulfate/phosphate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE A1
Synchrotron siteCHESS
BeamlineA1
Temperature [K]100
Detector technologyCCD
Collection date1996-10-01
DetectorADSC QUANTUM 4
Wavelength(s)0.97
Spacegroup nameP 61 2 2
Unit cell lengths122.700, 122.700, 243.700
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution6.000 - 2.300
R-factor0.173
Rwork0.173
R-free0.24300
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1ecp
RMSD bond length0.007

*

RMSD bond angle1.300

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareX-PLOR
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]6.0002.380
High resolution limit [Å]2.3002.300
Rmerge0.058

*

Number of reflections39577

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Completeness [%]84.9

*

36.2
Redundancy1.8

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.4298ammonium sulfate, citrate, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein60 (mg/ml)
21reservoirammonium sulfate30 (%)
31reservoircitrate50 (mM)pH5.4

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PDB entries from 2024-07-17

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