1NY3
Crystal structure of ADP bound to MAP KAP kinase 2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2002-06-15 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 1.0 |
Spacegroup name | F 41 3 2 |
Unit cell lengths | 253.049, 253.049, 253.049 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 - 3.200 * |
R-factor | 0.25913 |
Rwork | 0.259 |
R-free | 0.29200 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1nzk |
RMSD bond length | 0.022 * |
RMSD bond angle | 1.650 * |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | REFMAC (5.1.19) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 3.110 |
High resolution limit [Å] | 3.100 * | 3.000 |
Rmerge | 0.055 * | 0.631 * |
Total number of observations | 90852 * | |
Number of reflections | 12997 * | |
<I/σ(I)> | 32.1 | 2.29 |
Completeness [%] | 99.3 * | 100 * |
Redundancy | 6.96 | 21 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion * | 7.5 * | 296 | 2.0M Ammonium Sulfate, pH unbuffered, VAPOR DIFFUSION, HANGING DROP, temperature 296K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 5 (mg/ml) | |
2 | 1 | reservoir | HEPES | 20 (mM) | pH7.5 |
3 | 1 | reservoir | 200 (mM) | ||
4 | 1 | reservoir | dithiothreitol | 10 (mM) | |
5 | 1 | reservoir | 5 (mM) |