Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1NDO

NAPHTHALENE 1,2-DIOXYGENASE

Experimental procedure
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE BM14
Synchrotron siteESRF
BeamlineBM14
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date1997-11
DetectorMARRESEARCH
Spacegroup nameI 2 2 2
Unit cell lengths105.000, 174.000, 282.500
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.000 - 2.200

*

R-factor0.194

*

Rwork0.190
R-free0.23800

*

Structure solution methodMIR AND MAD
RMSD bond length0.020
RMSD bond angle0.040
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSHARP
Refinement softwareREFMAC
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.290
High resolution limit [Å]2.200

*

2.250
Rmerge0.0910.386

*

Number of reflections1170675920

*

<I/σ(I)>14.663.6
Completeness [%]96.0

*

97

*

Redundancy6.24
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

6pH 6.0
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein40 (mg/ml)
21reservoirammonium sulfate2.31 (M)
31reservoirMES0.1 (M)
41reservoirPEG2 (%)

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon