1MW8
Crystal Structure of a Complex between H365R mutant of 67 kDA N-terminal fragment of E. coli DNA Topoisomerase I and 5'-ACTTCGGGATG-3'
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 5ID-B |
Synchrotron site | APS |
Beamline | 5ID-B |
Temperature [K] | 103 |
Detector technology | CCD |
Collection date | 2001-12-07 |
Detector | MARRESEARCH |
Wavelength(s) | 0.95 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 63.392, 79.148, 141.798 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 70.000 * - 1.900 |
R-factor | 0.22595 |
Rwork | 0.223 |
R-free | 0.27200 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | H365R mutant apo form |
RMSD bond length | 0.013 * |
RMSD bond angle | 1.650 * |
Data scaling software | SCALA |
Phasing software | CNS |
Refinement software | REFMAC (5.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.000 | |
High resolution limit [Å] | 1.900 | |
Rmerge | 0.069 | 0.334 * |
Total number of observations | 209779 * | |
Number of reflections | 53723 | |
<I/σ(I)> | 7.7 | |
Completeness [%] | 95.5 | 66.4 * |
Redundancy | 3.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 287 | ammonium sulfate, sodium acetate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 287K |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 287 | ammonium sulfate, sodium acetate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 287K |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | (NH4)2(SO4) | ||
2 | 1 | 1 | (Na)(C2H3O2) | ||
3 | 1 | 2 | (Na)(C2H3O2) |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | ammonium sulfate | 2.1 (M) |