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1MW8

Crystal Structure of a Complex between H365R mutant of 67 kDA N-terminal fragment of E. coli DNA Topoisomerase I and 5'-ACTTCGGGATG-3'

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 5ID-B
Synchrotron siteAPS
Beamline5ID-B
Temperature [K]103
Detector technologyCCD
Collection date2001-12-07
DetectorMARRESEARCH
Wavelength(s)0.95
Spacegroup nameP 21 21 21
Unit cell lengths63.392, 79.148, 141.798
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution70.000

*

- 1.900
R-factor0.22595
Rwork0.223
R-free0.27200

*

Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)H365R mutant apo form
RMSD bond length0.013

*

RMSD bond angle1.650

*

Data scaling softwareSCALA
Phasing softwareCNS
Refinement softwareREFMAC (5.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]35.000
High resolution limit [Å]1.900
Rmerge0.0690.334

*

Total number of observations209779

*

Number of reflections53723
<I/σ(I)>7.7
Completeness [%]95.566.4

*

Redundancy3.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5287ammonium sulfate, sodium acetate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 287K
1VAPOR DIFFUSION, HANGING DROP5287ammonium sulfate, sodium acetate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 287K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111(NH4)2(SO4)
211(Na)(C2H3O2)
312(Na)(C2H3O2)
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirammonium sulfate2.1 (M)

223166

PDB entries from 2024-07-31

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