1I9R
STRUCTURE OF CD40L IN COMPLEX WITH THE FAB FRAGMENT OF HUMANIZED 5C8 ANTIBODY
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 1999-11-11 |
Detector | RIGAKU RAXIS IIC |
Wavelength(s) | 1.5418 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 224.480, 129.910, 96.490 |
Unit cell angles | 90.00, 109.60, 90.00 |
Refinement procedure
Resolution | 35.000 - 3.100 |
R-factor | 0.233 |
Rwork | 0.233 |
R-free | 0.28500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1aly |
RMSD bond length | 0.014 |
RMSD bond angle | 1.890 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | X-PLOR (98.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.000 | 3.210 |
High resolution limit [Å] | 3.100 | 3.100 |
Rmerge | 0.076 | 0.188 |
Number of reflections | 46508 | |
<I/σ(I)> | 7.52 | 1.97 |
Completeness [%] | 96.1 | 87.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion * | 6.5 | 298 | 20% PEG MME 550, 0.1 M MES, 0.01 M zinc sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 10-15 (mg/ml) | |
2 | 1 | reservoir | PEG550 MME | 20 (%(w/v)) | |
3 | 1 | reservoir | MES | 0.1 (M) | pH6.5 |
4 | 1 | reservoir | zinc sulfate | 0.01 (M) |