1HVY
Human thymidylate synthase complexed with dUMP and Raltitrexed, an antifolate drug, is in the closed conformation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 120 |
Detector technology | IMAGE PLATE |
Collection date | 1998-06-15 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 |
Unit cell lengths | 68.849, 70.495, 74.533 |
Unit cell angles | 70.23, 83.29, 73.28 |
Refinement procedure
Resolution | 20.090 - 1.900 |
R-factor | 0.201 |
Rwork | 0.201 |
R-free | 0.24400 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.400 |
Data scaling software | SCALEPACK |
Phasing software | CNS |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 6.000 | 1.960 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.072 | 0.340 |
Total number of observations | 229821 * | |
Number of reflections | 89364 | |
<I/σ(I)> | 11.8 | |
Completeness [%] | 95.0 | 87 |
Redundancy | 2.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.8 | 298 | PEG 4000, EDTA, Tris buffer, Ammonium Sulfate , pH 8.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 2.65 (mg/ml) | |
10 | 1 | reservoir | 2-mercaptoethanol | 20 (mM) | |
11 | 1 | reservoir | Tris-HCl | 100 (mM) | pH7.6 |
2 | 1 | drop | EDTA | 0.5 (mM) | |
3 | 1 | drop | 2-mercaptoethanol | 15 (mM) | |
4 | 1 | drop | Tris-base | 100 (mM) | pH8.8 |
5 | 1 | drop | PEG4000 | 20 (%) | |
6 | 1 | drop | ammonium sulfate | 1 (%sat) | |
7 | 1 | drop | Tris-HCl | 50 (mM) | |
8 | 1 | reservoir | PEG4000 | 40 (%) | |
9 | 1 | reservoir | ammonium sulfate | 2 (%sat) |