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1H7X

Dihydropyrimidine dehydrogenase (DPD) from pig, ternary complex of a mutant enzyme (C671A), NADPH and 5-fluorouracil

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsMAX II BEAMLINE I711
Synchrotron siteMAX II
BeamlineI711
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2000-03-15
DetectorMARRESEARCH
Spacegroup nameP 1 21 1
Unit cell lengths81.950, 159.290, 163.570
Unit cell angles90.00, 96.04, 90.00
Refinement procedure
Resolution25.080 - 2.010
R-factor0.171
Rwork0.171
R-free0.19200
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)DIHYDROPYRIMIDINE DEHYDROGENASE UNCOMPLEXED
RMSD bond length0.009
RMSD bond angle22.900

*

Data reduction softwareDENZO
Data scaling softwareSCALA
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.110
High resolution limit [Å]2.0002.000
Rmerge0.063

*

0.166

*

Total number of observations1471519

*

Number of reflections274925
<I/σ(I)>10.44.4
Completeness [%]99.095.8
Redundancy2.82.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

4.720

*

100 MM SODIUM CITRATE PH 4.7, 16-20 % POLYETHYLENE GLYCOL 6000, 1 MM DTT, 1 MM NADPH, 5 MM 5FU
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirPEG600019-22 (%(w/v))
21reservoirsodium citrate100 (mM)

222926

PDB entries from 2024-07-24

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