1H7X
Dihydropyrimidine dehydrogenase (DPD) from pig, ternary complex of a mutant enzyme (C671A), NADPH and 5-fluorouracil
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX II BEAMLINE I711 |
Synchrotron site | MAX II |
Beamline | I711 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2000-03-15 |
Detector | MARRESEARCH |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 81.950, 159.290, 163.570 |
Unit cell angles | 90.00, 96.04, 90.00 |
Refinement procedure
Resolution | 25.080 - 2.010 |
R-factor | 0.171 |
Rwork | 0.171 |
R-free | 0.19200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | DIHYDROPYRIMIDINE DEHYDROGENASE UNCOMPLEXED |
RMSD bond length | 0.009 |
RMSD bond angle | 22.900 * |
Data reduction software | DENZO |
Data scaling software | SCALA |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.110 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.063 * | 0.166 * |
Total number of observations | 1471519 * | |
Number of reflections | 274925 | |
<I/σ(I)> | 10.4 | 4.4 |
Completeness [%] | 99.0 | 95.8 |
Redundancy | 2.8 | 2.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 4.7 | 20 * | 100 MM SODIUM CITRATE PH 4.7, 16-20 % POLYETHYLENE GLYCOL 6000, 1 MM DTT, 1 MM NADPH, 5 MM 5FU |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | PEG6000 | 19-22 (%(w/v)) | |
2 | 1 | reservoir | sodium citrate | 100 (mM) |