1M4U
Crystal structure of Bone Morphogenetic Protein-7 (BMP-7) in complex with the secreted antagonist Noggin
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2001-04-15 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 1.04888, 0.91987, 0.91957, 0.88557 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 99.834, 99.834, 150.327 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 60.000 * - 2.420 |
R-factor | 0.24243 |
Rwork | 0.241 |
R-free | 0.27300 * |
Structure solution method | MAD |
RMSD bond length | 0.035 |
RMSD bond angle | 3.000 * |
Data reduction software | TRUNCATE |
Data scaling software | CCP4 ((TRUNCATE)) |
Phasing software | MLPHARE |
Refinement software | REFMAC (5.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 60.000 | 2.483 |
High resolution limit [Å] | 2.420 | 2.420 |
Rmerge | 0.054 * | 0.331 * |
Total number of observations | 92080 * | |
Number of reflections | 28463 | |
Completeness [%] | 96.8 | 99.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | 0.6 M disodium, 1.0 M monopotassium phosphate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 10 (mg/ml) | |
2 | 1 | reservoir | disodium | 0.6 (M) | |
3 | 1 | reservoir | monopotassium phosphate | 1.0 (M) | pH6.5 |