Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
New PDB entries
7BCE
DownloadVisualize
BU of 7bce by Molmil
Notum Fragment 718
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-[(4-methylpiperidin-1-yl)methyl]-1H-indole, DIMETHYL SULFOXIDE, ...
Authors:Zhao, Y, Jones, E.Y.
Deposit date:2020-12-19
Release date:2025-10-15
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural Analysis and Development of Notum Fragment Screening Hits.
Acs Chem Neurosci, 13, 2022
8RXM
DownloadVisualize
BU of 8rxm by Molmil
Galectin-3 in complex with thiogalactoside derivative
Descriptor: 5-bromanyl-3-[(2~{R},3~{R},4~{S},5~{R},6~{R})-4-[4-(4-chloranyl-1,3-thiazol-2-yl)-1,2,3-triazol-1-yl]-6-(hydroxymethyl)-3-methoxy-5-oxidanyl-oxan-2-yl]sulfanyl-pyridine-2-carbonitrile, CHLORIDE ION, GLYCEROL, ...
Authors:Hakansson, M, Diehl, C, Peterson, K, Zetterberg, F, Nilsson, U.
Deposit date:2024-02-07
Release date:2025-10-15
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Galectin-3 in complex with thiogalactoside derivative
To be published
8YY4
DownloadVisualize
BU of 8yy4 by Molmil
Kinesin-14 with AlF3 bound to 13 PF Microtubule
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Shibata, S, Imasaki, T, Shigematsu, H, Hagio, H, Endow, S.A, Nitta, R.
Deposit date:2024-04-03
Release date:2025-10-15
Method:ELECTRON MICROSCOPY (4.02 Å)
Cite:Structural transitions in kinesin minus-end directed microtubule motility.
Biorxiv, 2024
8YY6
DownloadVisualize
BU of 8yy6 by Molmil
Structure of a murine monoclonal antibody Fab5 targeting Epstein-Barr virus gB
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, BALF4, Fab5 H chain, ...
Authors:Fang, X.Y, Sun, C, Zeng, M.S, Liu, Z.
Deposit date:2024-04-03
Release date:2025-10-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Chimeric Glycoprotein Nanoparticles Elicit Robust Neutralizing Antibodies Against Epstein-Barr Virus.
Adv Mater, 2025
8Z1U
DownloadVisualize
BU of 8z1u by Molmil
Crystal structure of aminoglycoside efflux transporter MexY from Pseudomonas aeruginosa
Descriptor: Efflux pump membrane transporter, SULFATE ION
Authors:Murakami, S, Yamashita, E, Okada, U, Aoki, M.
Deposit date:2024-04-12
Release date:2025-10-15
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Crystal structure of aminoglycoside efflux transporter MexY from Pseudomonas aeruginosa
To Be Published
9BDM
DownloadVisualize
BU of 9bdm by Molmil
Cryo-EM structure of cardiac amyloid fibril from a variant ATTRV122delta, single filament morphology
Descriptor: Transthyretin
Authors:Nguyen, B.A, Ahmed, Y, Saelices, L.
Deposit date:2024-04-12
Release date:2025-10-15
Method:ELECTRON MICROSCOPY (3.63 Å)
Cite:Cryo-EM structure of cardiac amyloid fibril from a variant ATTRV122delta, single filament morphology
To Be Published
9BDR
DownloadVisualize
BU of 9bdr by Molmil
Cryo-EM structure of cardiac amyloid fibril from a variant ATTRV122delta, double filament morphology 1
Descriptor: Transthyretin
Authors:Nguyen, B.A, Ahmed, Y, Saelices, L.
Deposit date:2024-04-12
Release date:2025-10-15
Method:ELECTRON MICROSCOPY (3.82 Å)
Cite:Cryo-EM structure of cardiac amyloid fibril from a variant ATTRV122delta, double filament morphology 1
To Be Published
9DKK
DownloadVisualize
BU of 9dkk by Molmil
Designed miniproteins potently inhibit and protect against MERS-CoV. MERS-CoV S in complex with miniprotein cb3_GGGSGGGS_SB175, linker 7 (Local refinement of two RBDs and 2 miniproteins)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Miniprotein cb3_GGGSGGGS_SB175, ...
Authors:Tortorici, M.A, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
Deposit date:2024-09-09
Release date:2025-10-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Designed miniproteins potently inhibit and protect against MERS-CoV. MERS-CoV S in complex with miniprotein cb3_GGGSGGGS_SB175, linker 7 (Local refinement of two RBDs and 2 miniproteins)
To Be Published
9DTH
DownloadVisualize
BU of 9dth by Molmil
Tyr-His linked F33Y CuBMb
Descriptor: Myoglobin, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE
Authors:Lu, Y, Liu, Y.
Deposit date:2024-10-01
Release date:2025-10-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A Post-translational Histidine-Histidine Cross-Link Enhances Enzymatic Oxygen Reduction Activity with Greater pH Adaptability.
J.Am.Chem.Soc., 2025
9DTI
DownloadVisualize
BU of 9dti by Molmil
F33Y CuBMb
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, Myoglobin, ...
Authors:Lu, Y, Liu, Y.
Deposit date:2024-10-01
Release date:2025-10-15
Method:X-RAY DIFFRACTION (1.681 Å)
Cite:A Post-translational Histidine-Histidine Cross-Link Enhances Enzymatic Oxygen Reduction Activity with Greater pH Adaptability.
J.Am.Chem.Soc., 2025
9DVB
DownloadVisualize
BU of 9dvb by Molmil
Thermus thermophilus MreC-MreD complex with an internal MreD BRIL fusion and an anti-BRIL Fab
Descriptor: BAG2 anti-BRIL Fab heavy chain, BAG2 anti-BRIL Fab light chain, Cell shape-determining protein MreC, ...
Authors:Gilman, M.S.A, Kruse, A.C.
Deposit date:2024-10-07
Release date:2025-10-15
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:MreC-MreD structure reveals a multifaceted interface that controls MreC conformation
To Be Published
9DVC
DownloadVisualize
BU of 9dvc by Molmil
Thermus thermophilus MreC-MreD complex with a C-terminal MreD BRIL fusion and an anti-BRIL Fab
Descriptor: BAG2 anti-BRIL Fab heavy chain, BAG2 anti-BRIL Fab light chain, Cell shape-determining protein MreC, ...
Authors:Gilman, M.S.A, Kruse, A.C.
Deposit date:2024-10-07
Release date:2025-10-15
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:MreC-MreD structure reveals a multifaceted interface that controls MreC conformation
To Be Published
9DVD
DownloadVisualize
BU of 9dvd by Molmil
Cryo EM structure of Hendra G ectodomain in complex with Ephrin-B2 and Fab HENV-270
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ephrin-B2, ...
Authors:Binshtein, E, Crowe, J.E.
Deposit date:2024-10-07
Release date:2025-10-15
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Cryo EM structure of Hendra G ectodomain in complex with Ephrin-B2 and Fab HENV-270
To Be Published
9DVS
DownloadVisualize
BU of 9dvs by Molmil
CryoEM structure of Syn7942 RNAP-SigA holoenzyme
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Fang, M, Gu, Y, Matyszewski, M, Leanca, M, LiWang, A, Yuzenkova, Y, Corbett, K.D, Golden, S.E.
Deposit date:2024-10-08
Release date:2025-10-15
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Reconstitution of Circadian Transcription in vitro through RpaA Regulation
To Be Published
9DVT
DownloadVisualize
BU of 9dvt by Molmil
Cryo-EM structure of RpaA bound to PkaiBC DNA and the CTD of the alpha subunit of RNAP from the cyanobacterium Synechococcus elongatus
Descriptor: DNA-binding dual master transcriptional regulator RpaA, DNA-directed RNA polymerase subunit alpha, Non-template DNA, ...
Authors:Fang, M, Gu, Y, Matyszewski, M, Leanca, M, LiWang, A, Yuzenkova, Y, Corbett, K.D, Golden, S.E.
Deposit date:2024-10-08
Release date:2025-10-15
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:Reconstitution of Circadian Transcription in vitro through RpaA Regulation
To Be Published
9DVU
DownloadVisualize
BU of 9dvu by Molmil
CryoEM structure of RpaA bound to PkaiBC DNA and Syn7942 RNAP-SigA holoenzyme
Descriptor: DNA-binding dual master transcriptional regulator RpaA, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Fang, M, Gu, Y, Matyszewski, M, Leanca, M, LiWang, A, Yuzenkova, Y, Corbett, K.D, Golden, S.E.
Deposit date:2024-10-08
Release date:2025-10-15
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Reconstitution of Circadian Transcription in vitro through RpaA Regulation
To Be Published
9DVY
DownloadVisualize
BU of 9dvy by Molmil
Human mitochondrial ClpX with endogenous substrate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent Clp protease ATP-binding subunit clpX-like, ...
Authors:Chen, W.C.
Deposit date:2024-10-08
Release date:2025-10-15
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Assembly and proteolytic activation human ClpXP defined by cryo-EM
To Be Published
9DW0
DownloadVisualize
BU of 9dw0 by Molmil
Human ClpX-bound ClpP
Descriptor: ATP-dependent Clp protease proteolytic subunit, mitochondrial
Authors:Chen, W.C.
Deposit date:2024-10-08
Release date:2025-10-15
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Assembly and proteolytic activation human ClpXP defined by cryo-EM
To Be Published
9DW1
DownloadVisualize
BU of 9dw1 by Molmil
Human mitochondrial ClpP protease
Descriptor: ATP-dependent Clp protease proteolytic subunit, mitochondrial
Authors:Chen, W.C.
Deposit date:2024-10-08
Release date:2025-10-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Assembly and proteolytic activation human ClpXP defined by cryo-EM
To Be Published
9DW3
DownloadVisualize
BU of 9dw3 by Molmil
Human mitochondrial ClpP in complex with Bortezomib
Descriptor: ATP-dependent Clp protease proteolytic subunit, mitochondrial, N-[(1R)-1-(DIHYDROXYBORYL)-3-METHYLBUTYL]-N-(PYRAZIN-2-YLCARBONYL)-L-PHENYLALANINAMIDE
Authors:Chen, W.
Deposit date:2024-10-08
Release date:2025-10-15
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Assembly and proteolytic activation human ClpXP defined by cryo-EM
To Be Published
9DXN
DownloadVisualize
BU of 9dxn by Molmil
Structure of AcrB in the form of Native cell membrane nanoparticles (NCMNP33-50)
Descriptor: Multidrug efflux pump subunit AcrB
Authors:Guo, Y, Plutkins, S, Trinh, T.K.H, Catalano, C, Lin, Y.L, Guo, H.
Deposit date:2024-10-11
Release date:2025-10-15
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Synthesis, characterization, and application of membrane-active polymers, NCMNP33-x
To Be Published
9E61
DownloadVisualize
BU of 9e61 by Molmil
Cryo-EM structure of Saccharomyces cerevisiae Pmt4 apo form
Descriptor: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Dolichyl-phosphate-mannose--protein mannosyltransferase 4
Authors:Du, M, Yuan, Z, Li, H.
Deposit date:2024-10-29
Release date:2025-10-15
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Pmt4 recognizes two separate acceptor sites to O-mannosylate the S/T-rich regions of substrate proteins
To Be Published
9E6I
DownloadVisualize
BU of 9e6i by Molmil
Cryo-EM structure of Saccharomyces cerevisiae Pmt4-Ccw5 complex
Descriptor: (3R)-3,31-dimethyl-7,11,15,19,23,27-hexamethylidenedotriacont-31-en-1-yl dihydrogen phosphate, Cell wall mannoprotein CIS3, Dolichyl-phosphate-mannose--protein mannosyltransferase 4
Authors:Du, M, Yuan, Z, Li, H.
Deposit date:2024-10-30
Release date:2025-10-15
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Pmt4 recognizes two separate acceptor sites to O-mannosylate the S/T-rich regions of substrate proteins
To Be Published
9E6V
DownloadVisualize
BU of 9e6v by Molmil
Cryo-EM structure of Saccharomyces cerevisiae Pmt4-Ccw5 complex
Descriptor: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Cell wall mannoprotein CIS3, Dolichyl-phosphate-mannose--protein mannosyltransferase 4, ...
Authors:Du, M, Yuan, Z, Li, H.
Deposit date:2024-10-31
Release date:2025-10-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Pmt4 recognizes two separate acceptor sites to O-mannosylate the S/T-rich regions of substrate proteins
To Be Published
9E79
DownloadVisualize
BU of 9e79 by Molmil
Crystal structure of the MIR domain of the S. cerevisiae mannosyltransferase Pmt4
Descriptor: Dolichyl-phosphate-mannose--protein mannosyltransferase 4
Authors:Du, M, Yuan, Z, Li, H.
Deposit date:2024-11-01
Release date:2025-10-15
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Pmt4 recognizes two separate acceptor sites to O-mannosylate the S/T-rich regions of substrate proteins
To Be Published

243083

PDB entries from 2025-10-15

PDB statisticsPDBj update infoContact PDBjnumon