PDB形式変換不可の PDB エントリー

5MEI	Crystal structure of Agelastatin A bound to the 80S ribosome 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 McClary, B, Zinshteyn, B, Meyer, M, Jouanneau, M, Pellegrino, S, Yusupova, G, Schuller, A, Reyes, J.C.P, Lu, J, Luo, C, Dang, Y, Romo, D, Yusupov, M, Green, R, Liu, J.O. 登録日 2016-11-15 公開日 2017-06-28 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Inhibition of Eukaryotic Translation by the Antitumor Natural Product Agelastatin A. Cell Chem Biol, 24, 2017
5MGP	Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Huter, P, Mueller, C, Beckert, B, Arenz, S, Berninghausen, O, Beckmann, R, Wilson, N.D. 登録日 2016-11-21 公開日 2016-12-14 最終更新日 2017-08-30 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis for ArfA-RF2-mediated translation termination on mRNAs lacking stop codons. Nature, 541, 2017
5MKL	Crystal structure of SmAP (LSm) protein from Sulfolobus acidocaldarius 分子名称: Sm ribonucleo 著者 Nikulin, A.D, Lekontseva, N.V, Tishchenko, S.V. 登録日 2016-12-05 公開日 2017-12-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.086 Å) 主引用文献 Crystal structures and RNA-binding properties of Lsm proteins from archaea Sulfolobus acidocaldarius and Methanococcus vannielii: Similarity and difference of the U-binding mode. Biochimie, 175, 2020
5MMM	Structure of the 70S chloroplast ribosome 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein 2, ... 著者 Bieri, P, Leibundgut, M, Saurer, M, Boehringer, D, Ban, N. 登録日 2016-12-11 公開日 2017-01-11 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 The complete structure of the chloroplast 70S ribosome in complex with translation factor pY. EMBO J., 36, 2017
5MPB	26S proteasome in presence of AMP-PNP (s3) 分子名称: 26S protease regulatory subunit 4 homolog, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B homolog, ... 著者 Wehmer, M, Rudack, T, Beck, F, Aufderheide, A, Pfeifer, G, Plitzko, J.M, Foerster, F, Schulten, K, Baumeister, W, Sakata, E. 登録日 2016-12-16 公開日 2017-03-08 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (7.8 Å) 主引用文献 Structural insights into the functional cycle of the ATPase module of the 26S proteasome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5MPC	26S proteasome in presence of BeFx (s4) 分子名称: 26S protease regulatory subunit 4 homolog, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B homolog, ... 著者 Wehmer, M, Rudack, T, Beck, F, Aufderheide, A, Pfeifer, G, Plitzko, J.M, Foerster, F, Schulten, K, Baumeister, W, Sakata, E. 登録日 2016-12-16 公開日 2017-03-08 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (7.7 Å) 主引用文献 Structural insights into the functional cycle of the ATPase module of the 26S proteasome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5MQ3	Structure of AaLS-neg 分子名称: 6,7-dimethyl-8-ribityllumazine synthase 著者 Sasaki, E, Boehringer, D, Leibundgut, M, Ban, N, Hilvert, D. 登録日 2016-12-20 公開日 2017-03-22 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (5.4 Å) 主引用文献 Structure and assembly of scalable porous protein cages. Nat Commun, 8, 2017
5MQ7	Structure of AaLS-13 分子名称: 6,7-dimethyl-8-ribityllumazine synthase 著者 Sasaki, E, Boehringer, D, Leibundgut, M, Ban, N, Hilvert, D. 登録日 2016-12-20 公開日 2017-03-22 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (5.2 Å) 主引用文献 Structure and assembly of scalable porous protein cages. Nat Commun, 8, 2017
5MRC	Structure of the yeast mitochondrial ribosome - Class A 分子名称: 15S ribosomal RNA, 21S ribosomal RNA, GUANOSINE-5'-DIPHOSPHATE, ... 著者 Desai, N, Brown, A, Amunts, A, Ramakrishnan, V. 登録日 2016-12-22 公開日 2017-02-15 最終更新日 2018-02-07 実験手法 ELECTRON MICROSCOPY (3.25 Å) 主引用文献 The structure of the yeast mitochondrial ribosome. Science, 355, 2017
5MRE	Structure of the yeast mitochondrial ribosome - Class B 分子名称: 15S ribosomal RNA, 21S ribosomal RNA, GUANOSINE-5'-DIPHOSPHATE, ... 著者 Desai, N, Brown, A, Amunts, A, Ramakrishnan, V. 登録日 2016-12-22 公開日 2017-02-15 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.75 Å) 主引用文献 The structure of the yeast mitochondrial ribosome. Science, 355, 2017
5MRF	Structure of the yeast mitochondrial ribosome - Class C 分子名称: 15S ribosomal RNA, 21S ribosomal RNA, GUANOSINE-5'-DIPHOSPHATE, ... 著者 Desai, N, Brown, A, Amunts, A, Ramakrishnan, V. 登録日 2016-12-22 公開日 2017-02-15 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.97 Å) 主引用文献 The structure of the yeast mitochondrial ribosome. Science, 355, 2017
5MX7	1a,20S-dihydroxyvitamin D3 VDR complex 分子名称: 1a,20S-dihydroxyvitamin D3, Nuclear receptor coactivator 1, Vitamin D3 receptor A 著者 Rochel, N, Belorusova, A.Y. 登録日 2017-01-21 公開日 2017-11-29 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.98 Å) 主引用文献 1 alpha,20S-Dihydroxyvitamin D3 Interacts with Vitamin D Receptor: Crystal Structure and Route of Chemical Synthesis. Sci Rep, 7, 2017
5MYJ	Structure of 70S ribosome from Lactococcus lactis 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Franken, L.E, Oostergetel, G.T, Pijning, T, Puri, P, Boekema, E.J, Poolman, B, Guskov, A. 登録日 2017-01-26 公開日 2017-10-11 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (5.6 Å) 主引用文献 A general mechanism of ribosome dimerization revealed by single-particle cryo-electron microscopy. Nat Commun, 8, 2017
5NCO	Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome 分子名称: 23S rRNA, 4.5S SRP RNA (Ffs), 50S ribosomal protein L10, ... 著者 Jomaa, A, Hwang Fu, Y, Boerhinger, D, Leibundgut, M, Shan, S.O, Ban, N. 登録日 2017-03-06 公開日 2017-05-24 最終更新日 2018-03-28 実験手法 ELECTRON MICROSCOPY (4.8 Å) 主引用文献 Structure of the quaternary complex between SRP, SR, and translocon bound to the translating ribosome. Nat Commun, 8, 2017
5ND8	Hibernating ribosome from Staphylococcus aureus (Unrotated state) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Khusainov, I, Vicens, Q, Ayupov, R, Usachev, K, Myasnikov, A, Simonetti, A, Validov, S, Kieffer, B, Yusupova, G, Yusupov, M, Hashem, Y. 登録日 2017-03-07 公開日 2017-06-28 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structures and dynamics of hibernating ribosomes from Staphylococcus aureus mediated by intermolecular interactions of HPF. EMBO J., 36, 2017
5ND9	Hibernating ribosome from Staphylococcus aureus (Rotated state) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Khusainov, I, Vicens, Q, Ayupov, R, Usachev, K, Myasnikov, A, Simonetti, A, Validov, S, Kieffer, B, Yusupova, G, Yusupov, M, Hashem, Y. 登録日 2017-03-07 公開日 2017-06-28 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structures and dynamics of hibernating ribosomes from Staphylococcus aureus mediated by intermolecular interactions of HPF. EMBO J., 36, 2017
5NDG	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. 登録日 2017-03-08 公開日 2017-12-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NDJ	Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. 登録日 2017-03-08 公開日 2018-05-02 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NDK	Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. 登録日 2017-03-08 公開日 2017-12-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NDV	Crystal structure of Paromomycin bound to the yeast 80S ribosome 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. 登録日 2017-03-09 公開日 2017-12-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NDW	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. 登録日 2017-03-09 公開日 2017-12-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NGM	2.9S structure of the 70S ribosome composing the S. aureus 100S complex 分子名称: 16S ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Matzov, D, Aibara, S, Zimmerman, E, Bashan, A, Amunts, A, Yonath, A. 登録日 2017-03-18 公開日 2017-10-04 最終更新日 2018-11-28 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus. Nat Commun, 8, 2017
5NJT	Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Beckert, B, Abdelshahid, M, Schaefer, H, Steinchen, W, Arenz, S, Berninghausen, O, Beckmann, R, Bange, G, Turgay, K, Wilson, D.N. 登録日 2017-03-29 公開日 2017-06-14 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. EMBO J., 36, 2017
5NMB	Structure-activity relationship study of vitamin D analogs with oxolane group in their side chain 分子名称: (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(1~{S})-1-[(2~{S},5~{R})-5-(2-oxidanylpropan-2-yl)oxolan-2-yl]ethyl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol, Nuclear receptor coactivator 1, Vitamin D3 receptor A 著者 Rochel, N, Belorusova, A.Y. 登録日 2017-04-05 公開日 2017-05-24 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure-activity relationship study of vitamin D analogs with oxolane group in their side chain. Eur J Med Chem, 134, 2017
5NP6	70S structure prior to bypassing 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Agirrezabala, X, Samatova, E, Klimova, M, Zamora, M, Gil-Carton, D, Rodnina, M, Valle, M. 登録日 2017-04-13 公開日 2017-06-14 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Ribosome rearrangements at the onset of translational bypassing. Sci Adv, 3, 2017

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