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Legacy flatfile-incompatible PDB entries
8Q4D
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BU of 8q4d by Molmil
IstA-IstB(E167Q) Strand Transfer Complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA (118-MER) / TIR-transferred strand, ...
Authors:de la Gandara, A, Spinola-Amilibia, M, Araujo-Bazan, L, Nunez-Ramirez, R, Berger, J.M, Arias-Palomo, E.
Deposit date:2023-08-06
Release date:2024-07-10
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Molecular basis for transposase activation by a dedicated AAA+ ATPase.
Nature, 630, 2024
8Q4F
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BU of 8q4f by Molmil
Structure of arbekacin bound Escherichia coli 70S ribosome
Descriptor: 16S rRNA, 23S rRNA, 50S ribosomal protein L16, ...
Authors:Majumdar, S, Parajuli, N.P, Ge, X, Emmerich, A, Sanyal, S.
Deposit date:2023-08-06
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure of arbekacin bound Escherichia coli 70S ribosome
To be published
8Q4K
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BU of 8q4k by Molmil
Crystal structure of Borrelia burgdorferi BB0158
Descriptor: S2 lipoprotein, SULFATE ION
Authors:Brangulis, K, Tars, K.
Deposit date:2023-08-07
Release date:2024-01-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural studies of chromosomally encoded outer surface lipoprotein BB0158 from Borrelia burgdorferi sensu stricto.
Ticks Tick Borne Dis, 15, 2024
8Q54
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BU of 8q54 by Molmil
N5-methyl-H4MPT:CoM methyltransferase -coenzyme M complex + CoM
Descriptor: 1-THIOETHANESULFONIC ACID, MAGNESIUM ION, SODIUM ION, ...
Authors:Aziz, I, Vonck, J, Ermler, U.
Deposit date:2023-08-08
Release date:2024-08-21
Method:ELECTRON MICROSCOPY (2.39 Å)
Cite:Cryo-EM structure of the methanogenic Na+ translocating N5-methyl-H4MPT:CoM methyltransferase complex
To Be Published
8Q5I
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BU of 8q5i by Molmil
Structure of Candida albicans 80S ribosome in complex with cephaeline
Descriptor: 18S ribosomal RNA, 25S rRNA, 40S ribosomal protein S0, ...
Authors:Kolosova, O, Zgadzay, Y, Stetsenko, A, Atamas, A, Guskov, A, Yusupov, M.
Deposit date:2023-08-09
Release date:2023-09-13
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (2.45 Å)
Cite:Structural characterization of cephaeline binding to the eukaryotic ribosome using Cryo-Electron Microscopy
Biopolym Cell, 2023
8Q62
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BU of 8q62 by Molmil
Early closed conformation of the g-tubulin ring complex
Descriptor: Gamma-tubulin complex component 2, Gamma-tubulin complex component 3, Gamma-tubulin complex component 4, ...
Authors:Llorca, O, Serna, M, Fernandez-Leiro, R.
Deposit date:2023-08-10
Release date:2024-02-07
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.72 Å)
Cite:Transition of human gamma-tubulin ring complex into a closed conformation during microtubule nucleation.
Science, 383, 2024
8Q6J
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BU of 8q6j by Molmil
Atomic structure and conformational variability of the HER2-Trastuzumab-Pertuzumab complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Pertuzumab Fab heavy chain, Pertuzumab Fab light chain, ...
Authors:Ruedas, R, Vuillemot, R, Tubiana, T, Winter, J.M, Pieri, L, Arteni, A.A, Samson, C, Jonic, J, Mathieu, M, Bressanelli, S.
Deposit date:2023-08-11
Release date:2023-09-20
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure and conformational variability of the HER2-trastuzumab-pertuzumab complex.
J.Struct.Biol., 216, 2024
8Q6L
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BU of 8q6l by Molmil
human Carbonic Anhydrase I in complex with 3,4-dihydro-1H-benzo[c][1,2]oxaborinin-1-ol
Descriptor: 1,1-bis(oxidanyl)-3,4-dihydro-2,1$l^{4}-benzoxaborinine, Carbonic anhydrase 1, SODIUM ION, ...
Authors:Angeli, A, Ferraroni, M.
Deposit date:2023-08-13
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:human Carbonic Anhydrase I in complex with 3,4-dihydro-1H-benzo[c][1,2]oxaborinin-1-ol
To Be Published
8Q6T
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BU of 8q6t by Molmil
Helical reconstruction of the relaxed thick filament from FIB milled left ventricular mouse myofibrils
Descriptor: Myosin binding protein C, cardiac, Myosin light chain 3, ...
Authors:Tamborrini, D, Raunser, S.
Deposit date:2023-08-14
Release date:2023-11-01
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Structure of the native myosin filament in the relaxed cardiac sarcomere.
Nature, 623, 2023
8Q78
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BU of 8q78 by Molmil
Structure of the FP specific VHH TPP-3077
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, TPP-3077 VHH
Authors:Andersen, G.R, Pedersen, D.V.
Deposit date:2023-08-15
Release date:2024-08-28
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.225 Å)
Cite:Characterization of the bispecific VHH antibody tarperprumig (ALXN1820) specific for properdin and designed for low-volume administration.
Mabs, 16, 2024
8Q7G
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BU of 8q7g by Molmil
Human Carbonic Anhydrase I in complex with 3,4-dihydro-1H-benzo[c][1,2]oxaborinin-1-ol pH 7.0
Descriptor: 1,1-bis(oxidanyl)-3,4-dihydro-2,1$l^{4}-benzoxaborinine, ACETATE ION, Carbonic anhydrase 1, ...
Authors:Angeli, A, Ferraroni, M.
Deposit date:2023-08-16
Release date:2024-08-28
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Human Carbonic Anhydrase I in complex with 3,4-dihydro-1H-benzo[c][1,2]oxaborinin-1-ol pH 7.0
To Be Published
8Q7X
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BU of 8q7x by Molmil
Structure of the recycling U5 snRNP bound to chaperone CD2BP2 (State 4)
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, CD2 antigen cytoplasmic tail-binding protein 2, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Riabov Bassat, D, Plaschka, C, Vorlaender, M.K.
Deposit date:2023-08-17
Release date:2024-04-17
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structural basis of human U5 snRNP late biogenesis and recycling.
Nat.Struct.Mol.Biol., 31, 2024
8Q7Z
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BU of 8q7z by Molmil
Structure of the G. gallus 80S non-rotated ribosome
Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ...
Authors:Nurullina, L, Jenner, L, Yusupov, M.
Deposit date:2023-08-17
Release date:2024-08-28
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells
To Be Published
8Q84
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BU of 8q84 by Molmil
Outer kinetochore Dam1 protomer dimer Ndc80-Nuf2 coiled-coil complex
Descriptor: DASH complex subunit ASK1, DASH complex subunit DAD1, DASH complex subunit DAD2, ...
Authors:Muir, K.W, Barford, D.
Deposit date:2023-08-17
Release date:2023-12-06
Last modified:2023-12-20
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Structural mechanism of outer kinetochore Dam1-Ndc80 complex assembly on microtubules.
Science, 382, 2023
8Q87
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BU of 8q87 by Molmil
Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1
Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ...
Authors:Nurullina, L, Jenner, L, Yusupov, M.
Deposit date:2023-08-18
Release date:2024-08-28
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells
To Be Published
8QBT
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BU of 8qbt by Molmil
E. coli ApdP-stalled ribosomal complex
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S11, ...
Authors:Morici, M, Wilson, D.N.
Deposit date:2023-08-25
Release date:2024-03-20
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:RAPP-containing arrest peptides induce translational stalling by short circuiting the ribosomal peptidyltransferase activity.
Nat Commun, 15, 2024
8QBX
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BU of 8qbx by Molmil
Chimeric Adenovirus-derived dodecamer
Descriptor: Penton protein
Authors:Buzas, D, Borucu, U, Bufton, J, Kapadalakere, S.Y, Toelzer, C.
Deposit date:2023-08-25
Release date:2023-12-27
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Engineering the ADDobody protein scaffold for generation of high-avidity ADDomer super-binders.
Structure, 32, 2024
8QC4
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BU of 8qc4 by Molmil
M. tuberculosis salicylate synthase MbtI in complex with 5-(3-carboxyphenyl)furan-2-carboxylic acid
Descriptor: 5-(3-carboxyphenyl)furan-2-carboxylic acid, GLYCEROL, SULFATE ION, ...
Authors:Mori, M, Villa, S, Meneghetti, F, Bellinzoni, M.
Deposit date:2023-08-25
Release date:2023-11-15
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.578 Å)
Cite:Structural Study of a New MbtI-Inhibitor Complex: Towards an Optimized Model for Structure-Based Drug Discovery.
Pharmaceuticals, 16, 2023
8QCQ
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BU of 8qcq by Molmil
B. subtilis ApdA-stalled ribosomal complex
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Morici, M, Wilson, D.N.
Deposit date:2023-08-28
Release date:2024-03-20
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:RAPP-containing arrest peptides induce translational stalling by short circuiting the ribosomal peptidyltransferase activity.
Nat Commun, 15, 2024
8QDO
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BU of 8qdo by Molmil
Crystal structure of the tegument protein UL82 (pp71) from Human Cytomegalovirus
Descriptor: Protein pp71, TETRAETHYLENE GLYCOL
Authors:Bresch, I.P, Eberhage, J, Reubold, T.F, Eschenburg, S.
Deposit date:2023-08-30
Release date:2024-02-28
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of the tegument protein UL82 (pp71) from human cytomegalovirus.
Protein Sci., 33, 2024
8QF2
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BU of 8qf2 by Molmil
Beta-L-Arabinofurano-cyclitol Aziridines are Cysteine-directed Broad-spectrum Inhibitors and Activity-based Probes for Retaining Beta-L-arabinofuranosidases
Descriptor: (1~{S},2~{S},3~{S},4~{R})-4-azanyl-3-(hydroxymethyl)cyclopentane-1,2-diol, Non-reducing end beta-L-arabinofuranosidase, ZINC ION
Authors:Borlandelli, V, Offen, W.A, Moroz, O, Nin-Hill, A, McGregor, N, Binkhorst, L, Armstrong, Z, Ishiwata, A, Artola, M, Rovira, C, Davies, G.J, Overkleeft, H.
Deposit date:2023-09-02
Release date:2023-12-13
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:beta-l- Arabino furano-cyclitol Aziridines Are Covalent Broad-Spectrum Inhibitors and Activity-Based Probes for Retaining beta-l-Arabinofuranosidases.
Acs Chem.Biol., 18, 2023
8QF7
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BU of 8qf7 by Molmil
Human Carbonic Anhydrase II in complex with (3-((N-(4-sulfamoylbenzyl)phenylsulfonamido)methyl)phenyl)glycine
Descriptor: 2-[[3-[[phenylsulfonyl-[(4-sulfamoylphenyl)methyl]amino]methyl]phenyl]amino]ethanoic acid, Carbonic anhydrase 2, DIMETHYL SULFOXIDE, ...
Authors:Angeli, A, Ferraroni, M.
Deposit date:2023-09-04
Release date:2024-09-11
Method:X-RAY DIFFRACTION (1.225 Å)
Cite:Human Carbonic Anhydrase II in complex with (3-((N-(4-sulfamoylbenzyl)phenylsulfonamido)methyl)phenyl)glycine
To Be Published
8QF9
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BU of 8qf9 by Molmil
Human Carbonic Anhydrase II in complex with (3-((N-(4-sulfamoylphenethyl)phenylsulfonamido)methyl)phenyl)glycine
Descriptor: 2-[[3-[[phenylsulfonyl-[2-(4-sulfamoylphenyl)ethyl]amino]methyl]phenyl]amino]ethanoic acid, Carbonic anhydrase 2, GLYCEROL, ...
Authors:Angeli, A, Ferraroni, M.
Deposit date:2023-09-04
Release date:2024-09-11
Method:X-RAY DIFFRACTION (1.277 Å)
Cite:Human Carbonic Anhydrase II in complex with (3-((N-(4-sulfamoylphenethyl)phenylsulfonamido)methyl)phenyl)glycine
To Be Published
8QFD
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BU of 8qfd by Molmil
UFL1 E3 ligase bound 60S ribosome
Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Makhlouf, L, Kulathu, Y, Zeqiraj, E.
Deposit date:2023-09-04
Release date:2024-02-21
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:The UFM1 E3 ligase recognizes and releases 60S ribosomes from ER translocons.
Nature, 627, 2024
8QFK
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BU of 8qfk by Molmil
Human Carbonic Anhydrase II in complex with (3-((N-(4-sulfamoylbenzyl)methylsulfonamido)methyl)phenyl)glycine
Descriptor: 2-[[3-[[methylsulfonyl-[(4-sulfamoylphenyl)methyl]amino]methyl]phenyl]amino]ethanoic acid, Carbonic anhydrase 2, GLYCEROL, ...
Authors:Angeli, A, Ferraroni, M.
Deposit date:2023-09-04
Release date:2024-09-11
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:Human Carbonic Anhydrase II in complex with (3-((N-(4-sulfamoylbenzyl)methylsulfonamido)methyl)phenyl)glycine
To Be Published

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PDB entries from 2024-11-13

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