Legacy flatfile-incompatible PDB entries

7KEK	Structure of the free outer-arm dynein in pre-parallel state Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Dynein alpha heavy chain, ... Authors: Rao, Q, Zhang, K. Deposit date: 2020-10-11 Release date: 2021-09-29 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (8 Å) Cite: Structures of outer-arm dynein array on microtubule doublet reveal a motor coordination mechanism. Nat.Struct.Mol.Biol., 28, 2021
7KGB	CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9 Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Cui, Z, Zhang, J. Deposit date: 2020-10-16 Release date: 2022-01-19 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Discovery of natural-product-derived sequanamycins as potent oral anti-tuberculosis agents. Cell, 2023
7KH1	Baseplate Complex for Myoviridae Phage XM1 Descriptor: baseplate organization protein, gp11, baseplate stabilizing protein, ... Authors: Wang, Z, Klose, T, Jiang, W, Kuhn, R.J. Deposit date: 2020-10-19 Release date: 2021-10-27 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structure of Vibrio phage XM1, a simple contractile DNA injection machine Biorxiv, 2021
7KIP	A 3.4 Angstrom cryo-EM structure of the human coronavirus spike trimer computationally derived from vitrified NL63 virus particles Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ... Authors: Zhang, K, Li, S, Pintilie, G, Chmielewski, D, Schmid, M, Simmons, G, Jin, J, Chiu, W. Deposit date: 2020-10-24 Release date: 2020-11-11 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.39 Å) Cite: A 3.4- angstrom cryo-EM structure of the human coronavirus spike trimer computationally derived from vitrified NL63 virus particles. Biorxiv, 2020
7KJK	The Neck region of Phage XM1 (6-fold symmetry) Descriptor: Collar spike protein, Head completion protein, Tail sheath protein, ... Authors: Wang, Z, Klose, T, Jiang, W, Kuhn, R.J. Deposit date: 2020-10-26 Release date: 2021-11-03 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structure of Vibrio phage XM1, a simple contractile DNA injection machine Biorxiv, 2021
7KLN	Myoviridae Phage XM1 Neck Region (12-fold) Descriptor: Head completion protein, gp1, Portal protein Authors: Wang, Z, Klose, T, Jiang, W, Kuhn, R.J. Deposit date: 2020-10-30 Release date: 2021-11-03 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structure of Vibrio phage XM1, a simple contractile DNA injection machine Biorxiv, 2021
7KP5	Energetic and structural effects of the Tanford transition on the ligand recognition of bovine Beta-lactoglobulin Descriptor: Beta-lactoglobulin, DODECYL SULFATE Authors: Rodriguez-Hernandez, A, Rodriguez-Romero, A. Deposit date: 2020-11-10 Release date: 2021-01-27 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Energetic and structural effects of the Tanford transition on ligand recognition of bovine beta-lactoglobulin. Arch.Biochem.Biophys., 699, 2021
7KR6	Glycoside hydrolase family 16 endo-glucanase from Bacteroides ovatus in complex with G4G3G-2F-DNP Descriptor: Glycoside hydrolase family 16 protein, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-2-deoxy-2-fluoro-alpha-D-glucopyranose Authors: Tamura, K, Brumer, H, van Petegem, F. Deposit date: 2020-11-18 Release date: 2021-05-19 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.56 Å) Cite: Orthogonal Active-Site Labels for Mixed-Linkage endo-beta-Glucanases. Acs Chem.Biol., 16, 2021
7KTS	Negative stain EM structure of the human SAGA coactivator complex (TRRAP, core, splicing module) Descriptor: Ataxin-7, Isoform 3 of Transcription factor SPT20 homolog, STAGA complex 65 subunit gamma, ... Authors: Herbst, D.A, Esbin, M.N, Nogales, E. Deposit date: 2020-11-24 Release date: 2021-11-10 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (19.09 Å) Cite: Structure of the human SAGA coactivator complex. Nat.Struct.Mol.Biol., 28, 2021
7KV2	Surface glycan-binding protein A from Bacteroides thetaiotaomicron Descriptor: 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, RagB/SusD family nutrient uptake outer membrane protein, ... Authors: Tamura, K, Brumer, H, Van Petegem, F. Deposit date: 2020-11-26 Release date: 2021-02-17 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota. J.Biol.Chem., 296, 2021
7KV3	Surface glycan-binding protein A from Bacteroides thetaiotaomicron in complex with laminarihexaose Descriptor: RagB/SusD family nutrient uptake outer membrane protein, SULFATE ION, beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose Authors: Tamura, K, Brumer, H, Van Petegem, F. Deposit date: 2020-11-26 Release date: 2021-02-17 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota. J.Biol.Chem., 296, 2021
7KV4	Surface glycan-binding protein A from Bacteroides fluxus Descriptor: SusD family protein Authors: Tamura, K, Brumer, H, Van Petegem, F. Deposit date: 2020-11-26 Release date: 2021-02-17 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.84 Å) Cite: Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota. J.Biol.Chem., 296, 2021
7KV5	Surface glycan-binding protein B from Bacteroides fluxus Descriptor: DI(HYDROXYETHYL)ETHER, GUANIDINE, PKD domain protein Authors: Tamura, K, Brumer, H, Van Petegem, F. Deposit date: 2020-11-26 Release date: 2021-02-17 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.82 Å) Cite: Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota. J.Biol.Chem., 296, 2021
7KV6	Surface glycan-binding protein B from Bacteroides fluxus in complex with mixed-linkage glucotriose Descriptor: GUANIDINE, PKD domain protein, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose Authors: Tamura, K, Brumer, H, Van Petegem, F. Deposit date: 2020-11-26 Release date: 2021-02-17 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota. J.Biol.Chem., 296, 2021
7KV7	Surface glycan-binding protein B from Bacteroides fluxus in complex with laminaritriose Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, LYSINE, ... Authors: Tamura, K, Brumer, H, Van Petegem, F. Deposit date: 2020-11-26 Release date: 2021-02-17 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota. J.Biol.Chem., 296, 2021
7KWC	Surface glycan-binding protein B (truncated) from Bacteroides thetaiotaomicron Descriptor: BtSGBP-B_31-285 Authors: Tamura, K, Brumer, H, Van Petegem, F. Deposit date: 2020-11-30 Release date: 2021-02-17 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.611 Å) Cite: Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota. J.Biol.Chem., 296, 2021
7KZM	Outer dynein arm bound to doublet microtubules from C. reinhardtii Descriptor: DC1, DC2, Dynein 11 kDa light chain, ... Authors: Walton, T, Wu, H, Brown, A.B. Deposit date: 2020-12-10 Release date: 2021-01-20 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (7.5 Å) Cite: Structure of a microtubule-bound axonemal dynein. Nat Commun, 12, 2021
7KZO	Outer dynein arm docking complex bound to doublet microtubules from C. reinhardtii Descriptor: Dynein gamma chain, flagellar outer arm, GUANOSINE-5'-DIPHOSPHATE, ... Authors: Walton, T, Wu, H, Brown, A.B. Deposit date: 2020-12-10 Release date: 2021-01-20 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structure of a microtubule-bound axonemal dynein. Nat Commun, 12, 2021
7KZP	Structure of the human Fanconi anaemia Core complex Descriptor: E3 ubiquitin-protein ligase FANCL, Fanconi anemia core complex-associated protein 100, Fanconi anemia core complex-associated protein 20, ... Authors: Wang, S.L, Pavletich, N.P. Deposit date: 2020-12-10 Release date: 2021-03-10 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structure of the FA core ubiquitin ligase closing the ID clamp on DNA. Nat.Struct.Mol.Biol., 28, 2021
7KZQ	Structure of the human Fanconi anaemia Core-ID complex Descriptor: E3 ubiquitin-protein ligase FANCL, Fanconi anemia core complex-associated protein 100, Fanconi anemia core complex-associated protein 20, ... Authors: Wang, S.L, Pavletich, N.P. Deposit date: 2020-12-10 Release date: 2021-03-10 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Structure of the FA core ubiquitin ligase closing the ID clamp on DNA. Nat.Struct.Mol.Biol., 28, 2021
7KZR	Structure of the human Fanconi Anaemia Core-UBE2T-ID complex Descriptor: E3 ubiquitin-protein ligase FANCL, Fanconi anemia core complex-associated protein 100, Fanconi anemia core complex-associated protein 20, ... Authors: Wang, S.L, Pavletich, N.P. Deposit date: 2020-12-10 Release date: 2021-03-10 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Structure of the FA core ubiquitin ligase closing the ID clamp on DNA. Nat.Struct.Mol.Biol., 28, 2021
7KZS	Structure of the human fanconi anaemia Core-UBE2T-ID-DNA complex in open state Descriptor: DNA (25-MER), E3 ubiquitin-protein ligase FANCL, Fanconi anemia core complex-associated protein 100, ... Authors: Wang, S.L, Pavletich, N.P. Deposit date: 2020-12-10 Release date: 2021-03-10 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Structure of the FA core ubiquitin ligase closing the ID clamp on DNA. Nat.Struct.Mol.Biol., 28, 2021
7KZT	Structure of the human fanconi anaemia Core-UBE2T-ID-DNA complex in intermediate state Descriptor: DNA (22-MER), E3 ubiquitin-protein ligase FANCL, Fanconi anemia core complex-associated protein 100, ... Authors: Wang, S.L, Pavletich, N.P. Deposit date: 2020-12-10 Release date: 2021-03-10 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Structure of the FA core ubiquitin ligase closing the ID clamp on DNA. Nat.Struct.Mol.Biol., 28, 2021
7KZV	Structure of the human fanconi anaemia Core-UBE2T-ID-DNA complex in closed state Descriptor: DNA (29-MER), E3 ubiquitin-protein ligase FANCL, Fanconi anemia core complex-associated protein 100, ... Authors: Wang, S.L, Pavletich, N.P. Deposit date: 2020-12-10 Release date: 2021-03-10 Last modified: 2024-11-20 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Structure of the FA core ubiquitin ligase closing the ID clamp on DNA. Nat.Struct.Mol.Biol., 28, 2021
7L08	Cryo-EM structure of the human 55S mitoribosome-RRFmt complex. Descriptor: 12S rRNA, 16S RRNA, 28S ribosomal protein S10, ... Authors: Koripella, R, Agrawal, E.K, Deep, A, Agrawal, R.K. Deposit date: 2020-12-11 Release date: 2021-05-12 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (3.49 Å) Cite: Distinct mechanisms of the human mitoribosome recycling and antibiotic resistance. Nat Commun, 12, 2021

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