Legacy flatfile-incompatible PDB entries

8G60	mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state) Descriptor: 1,4-DIAMINOBUTANE, 18S rRNA, 28S rRNA, ... Authors: Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Altman, R.B, Blanchard, S.C. Deposit date: 2023-02-14 Release date: 2023-04-19 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.54 Å) Cite: mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023
8G61	mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state) Descriptor: 1,4-DIAMINOBUTANE, 18S rRNA, 28S rRNA, ... Authors: Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Altman, R.B, Blanchard, S.C. Deposit date: 2023-02-14 Release date: 2023-04-19 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.94 Å) Cite: mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023
8G6C	GTP Cyclohydrolase-IB with manganese Descriptor: 1,2-ETHANEDIOL, GTP cyclohydrolase FolE2, MANGANESE (II) ION Authors: McWhorter, K.L, Amaya Lopez, C.Y, Davis, K.M. Deposit date: 2023-02-14 Release date: 2024-02-21 Method: X-RAY DIFFRACTION (2.82 Å) Cite: Combatting melioidosis with chemical synthetic lethality To Be Published
8G6J	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2) Descriptor: (3R,6R,9S,12S,15S,18S,20R,24aR)-6-[(2S)-butan-2-yl]-3,12-bis[(1R)-1-hydroxy-2-methylpropyl]-8,9,11,17,18-pentamethyl-15-[(2S)-2-methylbutyl]hexadecahydropyrido[1,2-a][1,4,7,10,13,16,19]heptaazacyclohenicosine-1,4,7,10,13,16,19(21H)-heptone, (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine, 1,4-DIAMINOBUTANE, ... Authors: Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Altman, R.B, Blanchard, S.C. Deposit date: 2023-02-15 Release date: 2023-04-19 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023
8G6W	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe Descriptor: 16S rRNA, 2-AMINO-BENZAMIDE, 23S rRNA, ... Authors: Majumdar, C, Cate, J.H.D. Deposit date: 2023-02-16 Release date: 2023-04-05 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.02 Å) Cite: Aminobenzoic Acid Derivatives Obstruct Induced Fit in the Catalytic Center of the Ribosome. Acs Cent.Sci., 9, 2023
8G71	Spike/Nb2 complex with 1 RBD up Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Ye, G, Bu, F, Liu, B, Li, F. Deposit date: 2023-02-16 Release date: 2024-02-21 Method: ELECTRON MICROSCOPY (2.1 Å) Cite: SARS-CoV-2 spike/Nb2 complex with 1 RBD up To Be Published
8G79	Local refinement of SARS-CoV-2 spike/nanobody mixture complex around RBD Descriptor: Nanosota-3, Nanosota-4, Spike glycoprotein Authors: Ye, G, Bu, F, Liu, B, Li, F. Deposit date: 2023-02-16 Release date: 2024-02-21 Method: ELECTRON MICROSCOPY (6.1 Å) Cite: Local refinement of SARS-CoV-2 spike/nanobody mixture complex around RBD To Be Published
8G7P	Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Rybak, M.Y, Gagnon, M.G. Deposit date: 2023-02-16 Release date: 2024-03-06 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance. Nat.Struct.Mol.Biol., 31, 2024
8G7Q	Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Rybak, M.Y, Gagnon, M.G. Deposit date: 2023-02-16 Release date: 2024-03-06 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance. Nat.Struct.Mol.Biol., 31, 2024
8G7R	Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Rybak, M.Y, Gagnon, M.G. Deposit date: 2023-02-16 Release date: 2024-03-06 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance. Nat.Struct.Mol.Biol., 31, 2024
8G7S	Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Rybak, M.Y, Gagnon, M.G. Deposit date: 2023-02-16 Release date: 2024-03-06 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance. Nat.Struct.Mol.Biol., 31, 2024
8G8P	F420-2/GTP(GDP) complex of F420-gamma glutamyl ligase (CofE) from Archaeoglobus fulgidus Descriptor: COENZYME F420, Coenzyme F420:L-glutamate ligase, GUANOSINE-5'-DIPHOSPHATE, ... Authors: Bashiri, G, Squire, C.J. Deposit date: 2023-02-18 Release date: 2024-02-28 Method: X-RAY DIFFRACTION (1.83 Å) Cite: Poly-gamma-glutamylation of biomolecules. Nat Commun, 15, 2024
8GBS	Integrative model of the native Ana GV shell Descriptor: Gas vesicle protein C, Gas vesicle structural protein Authors: Dutka, P, Metskas, L.A, Hurt, R.C, Salahshoor, H, Wang, T.U, Malounda, D, Lu, G, Chou, T.F, Shapiro, M.G, Jensen, J.J. Deposit date: 2023-02-28 Release date: 2023-04-19 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (8 Å) Cite: Structure of Anabaena flos-aquae gas vesicles revealed by cryo-ET. Structure, 31, 2023
8GDW	Crystal structure of Domain Related to Iron (DRI) from cyanobacteria Descriptor: Ssr1698 protein, ZINC ION Authors: Kumaran, D, Grosjean, N, Blaby, E.C. Deposit date: 2023-03-06 Release date: 2024-03-13 Last modified: 2024-04-24 Method: X-RAY DIFFRACTION (2.35 Å) Cite: A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria. Nat Commun, 15, 2024
8GH6	Bombyx mori R2 retrotransposon initiating target-primed reverse transcription Descriptor: 28S DNA bottom strand, 3' side, 5' side (priming strand), ... Authors: Wilkinson, M.E, Zhang, F. Deposit date: 2023-03-09 Release date: 2023-04-05 Last modified: 2023-08-16 Method: ELECTRON MICROSCOPY (3.08 Å) Cite: Structure of the R2 non-LTR retrotransposon initiating target-primed reverse transcription. Science, 380, 2023
8GJ1	E. coli clamp loader with open clamp on primed template DNA (form 2) Descriptor: ADENOSINE-5'-DIPHOSPHATE, Beta sliding clamp, DNA polymerase III subunit delta, ... Authors: Oakley, A.J, Xu, Z.-Q, Dixon, N.E. Deposit date: 2023-03-14 Release date: 2024-03-27 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural characterisation of the complete cycle of sliding clamp loading in E. coli To Be Published
8GJD	X-ray crystallographic structure of a beta-hairpin peptide derived from Abeta 17-36. (ORN)LVFFAED(ORN)AII(N-Me-Gly)LMV Descriptor: Beta-hairpin peptide derived from Abeta 17-36, IODIDE ION Authors: Kreutzer, A.G, Ruttenberg, S.M, Nowick, J.S, Truex, N.L. Deposit date: 2023-03-15 Release date: 2024-01-17 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.03 Å) Cite: beta-Hairpin Alignment Alters Oligomer Formation in A beta-Derived Peptides. Biochemistry, 63, 2024
8GJM	17b10 fab in complex with full-length SARS-CoV-2 Spike G614 trimer Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Kwon, H.J, Zhang, J, Kosikova, M, Tang, W.C, Rodriguez, U.O, Peng, H.Q, Meseda, C.A, Pedro, C.L, Schmeisser, F, Lu, J.M, Zhou, B, Davis, C.T, Wentworth, D.E, Chen, W.H, Shriver, M.C, Pasetti, M.F, Weir, J.P, Chen, B, Xie, H. Deposit date: 2023-03-16 Release date: 2023-04-05 Last modified: 2023-04-19 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Distinct in vitro and in vivo neutralization profiles of monoclonal antibodies elicited by the receptor binding domain of the ancestral SARS-CoV-2. J Med Virol, 95, 2023
8GL6	The Type 9 Secretion System in vitro assembled, RemA-CTD substrate bound complex Descriptor: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Protein involved in gliding motility SprA, ... Authors: Deme, J.C, Lea, S.M. Deposit date: 2023-03-21 Release date: 2024-01-31 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: The Type 9 Secretion System caught in the act of transport Nat Microbiol, 2024
8GL8	The Type 9 Secretion System Extended Translocon - SprA-PorV-PPI-RemZ-SkpA-SprE complex Descriptor: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Periplasmic chaperone for outer membrane proteins Skp, ... Authors: Deme, J.C, Lea, S.M. Deposit date: 2023-03-21 Release date: 2024-01-31 Method: ELECTRON MICROSCOPY (2.2 Å) Cite: The Type 9 Secretion System caught in the act of transport Nat Microbiol, 2024
8GLJ	The Type 9 Secretion System in vitro assembled, FspA-CTD substrate bound complex Descriptor: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Por secretion system C-terminal sorting domain-containing protein, ... Authors: Deme, J.C, Lea, S.M. Deposit date: 2023-03-22 Release date: 2024-01-31 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: The Type 9 Secretion System caught in the act of transport Nat Microbiol, 2024
8GLK	The Type 9 Secretion System dGldL peak II, NucA substrate bound complex Descriptor: Endonuclease I, Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, ... Authors: Deme, J.C, Lea, S.M. Deposit date: 2023-03-22 Release date: 2024-01-31 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: The Type 9 Secretion System caught in the act of transport Nat Microbiol, 2024
8GLM	The Type 9 Secretion System in vivo assembled, RemZ substrate bound complex - conformation 1 Descriptor: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Protein involved in gliding motility SprA, ... Authors: Deme, J.C, Lea, S.M. Deposit date: 2023-03-22 Release date: 2024-01-31 Method: ELECTRON MICROSCOPY (2.2 Å) Cite: The Type 9 Secretion System caught in the act of transport Nat Microbiol, 2024
8GLN	The Type 9 Secretion System in vivo assembled, RemZ substrate bound complex - conformation 2 Descriptor: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Protein involved in gliding motility SprA, ... Authors: Deme, J.C, Lea, S.M. Deposit date: 2023-03-22 Release date: 2024-01-31 Method: ELECTRON MICROSCOPY (2.2 Å) Cite: The Type 9 Secretion System caught in the act of transport Nat Microbiol, 2024
8GLP	mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) Descriptor: 1,4-DIAMINOBUTANE, 18S rRNA, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ... Authors: Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Watson, Z.L, Altman, R.B, Blanchard, S.C. Deposit date: 2023-03-22 Release date: 2023-04-19 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (1.67 Å) Cite: mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023

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