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PDB形式変換不可の PDB エントリー
6WS0
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Rational drug design of phenazopyridine derivatives as novel inhibitors of Rev1-CT
分子名称: DNA polymerase zeta catalytic subunit, DNA repair protein REV1, Mitotic spindle assembly checkpoint protein MAD2B
著者McPherson, K.S, Korzhnev, D.M.
登録日2020-04-30
公開日2020-12-23
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.24 Å)
主引用文献Structure-Based Drug Design of Phenazopyridine Derivatives as Inhibitors of Rev1 Interactions in Translesion Synthesis.
Chemmedchem, 16, 2021
6WS5
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Rational drug design of phenazopyridine derivatives as novel inhibitors of Rev1-CT
分子名称: 3-[(Z)-(2,3-difluorophenyl)diazenyl]pyridine-2,6-diamine, DNA polymerase zeta catalytic subunit, DNA repair protein REV1, ...
著者McPherson, K.S, Korzhnev, D.M.
登録日2020-04-30
公開日2020-12-23
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.472 Å)
主引用文献Structure-Based Drug Design of Phenazopyridine Derivatives as Inhibitors of Rev1 Interactions in Translesion Synthesis.
Chemmedchem, 16, 2021
6WXE
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Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Upright conformation
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Intermediate capsid protein VP6, ...
著者Herrmann, T, Harrison, S.C, Jenni, S.
登録日2020-05-10
公開日2021-01-20
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Functional refolding of the penetration protein on a non-enveloped virus.
Nature, 590, 2021
6WXF
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Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Intermediate conformation
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Intermediate capsid protein VP6, ...
著者Herrmann, T, Harrison, S.C, Jenni, S.
登録日2020-05-10
公開日2021-01-20
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Functional refolding of the penetration protein on a non-enveloped virus.
Nature, 590, 2021
6WXG
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Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Reversed conformation
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Intermediate capsid protein VP6, ...
著者Herrmann, T, Harrison, S.C, Jenni, S.
登録日2020-05-10
公開日2021-01-20
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Functional refolding of the penetration protein on a non-enveloped virus.
Nature, 590, 2021
6X02
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Nup84-Nup133 (aa521-1157) from S. cerevisiae bound by VHH-SAN8
分子名称: Nucleoporin NUP133, Nucleoporin NUP84, VHH-SAN8
著者Nordeen, S.A, Schwartz, T.U.
登録日2020-05-15
公開日2020-12-09
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (6.38 Å)
主引用文献Yeast Nup84-Nup133 complex structure details flexibility and reveals conservation of the membrane anchoring ALPS motif.
Nat Commun, 11, 2020
6X03
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Nup84-Nup133 (aa521-1157) from S. cerevisiae bound by VHH-SAN8 and VHH-SAN9
分子名称: Nucleoporin NUP133, Nucleoporin NUP84, VHH-SAN8, ...
著者Nordeen, S.A, Schwartz, T.U.
登録日2020-05-15
公開日2020-12-09
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (7.3 Å)
主引用文献Yeast Nup84-Nup133 complex structure details flexibility and reveals conservation of the membrane anchoring ALPS motif.
Nat Commun, 11, 2020
6X2I
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The Cutavirus (CuV) capsid structure
分子名称: VP2
著者Mietzsch, M, Agbandje-McKenna, M.
登録日2020-05-20
公開日2020-07-01
最終更新日2025-05-21
実験手法ELECTRON MICROSCOPY (2.87 Å)
主引用文献Structural Characterization of Cuta- and Tusavirus: Insight into Protoparvoviruses Capsid Morphology.
Viruses, 12, 2020
6X2K
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The Tusavirus (TuV) capsid structure
分子名称: VP2
著者Mietzsch, M, Agbandje-McKenna, M.
登録日2020-05-20
公開日2020-07-01
最終更新日2025-06-04
実験手法ELECTRON MICROSCOPY (2.88 Å)
主引用文献Structural Characterization of Cuta- and Tusavirus: Insight into Protoparvoviruses Capsid Morphology.
Viruses, 12, 2020
6X32
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Wt pig RyR1 in complex with apoCaM, EGTA condition (class 1 and 2, closed)
分子名称: Calmodulin-1, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine Receptor, ...
著者Woll, K.W, Haji-Ghassemi, O, Van Petegem, F.
登録日2020-05-21
公開日2021-01-13
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Pathological conformations of disease mutant Ryanodine Receptors revealed by cryo-EM.
Nat Commun, 12, 2021
6X33
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Wt pig RyR1 in complex with apoCaM, EGTA condition (class 3, open)
分子名称: Calmodulin-1, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine Receptor, ...
著者Woll, K.W, Haji-Ghassemi, O, Van Petegem, F.
登録日2020-05-21
公開日2021-01-13
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Pathological conformations of disease mutant Ryanodine Receptors revealed by cryo-EM.
Nat Commun, 12, 2021
6X35
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Pig R615C RyR1 in complex with CaM, EGTA (class 1, open)
分子名称: Calmodulin-1, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine Receptor, ...
著者Woll, K.W, Haji-Ghassemi, O, Van Petegem, F.
登録日2020-05-21
公開日2021-01-13
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Pathological conformations of disease mutant Ryanodine Receptors revealed by cryo-EM.
Nat Commun, 12, 2021
6X36
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Pig R615C RyR1 in complex with CaM, EGTA (class 3, closed)
分子名称: Calmodulin-1, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine Receptor
著者Woll, K.W, Haji-Ghassemi, O, Van Petegem, F.
登録日2020-05-21
公開日2021-01-13
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (4.7 Å)
主引用文献Pathological conformations of disease mutant Ryanodine Receptors revealed by cryo-EM.
Nat Commun, 12, 2021
6X5I
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Cryo-EM of peptide-like filament of 1-KMe3
分子名称: 1-KMe3 peptide-like fibril
著者Wang, F, Feng, Z, Xu, B, Egelman, E.H.
登録日2020-05-26
公開日2020-06-03
最終更新日2025-04-09
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Artificial Intracellular Filaments.
Cell Rep Phys Sci, 1, 2020
6X62
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Legionella pneumophila Dot T4SS OMC
分子名称: DotC, DotD, Inner membrane lipoprotein YiaD, ...
著者Durie, C.L, Sheedlo, M.J, Chung, J.M, Byrne, B.G, Su, M, Knight, T, Swanson, M.S, Lacy, D.B, Ohi, M.D.
登録日2020-05-27
公開日2020-09-30
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural analysis of the Legionella pneumophila Dot/Icm type IV secretion system core complex.
Elife, 9, 2020
6X63
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Atomic-Resolution Structure of HIV-1 Capsid Tubes by Magic Angle Spinning NMR
分子名称: HIV-1 capsid protein
著者Lu, M, Russell, R.W, Bryer, A, Quinn, C.M, Hou, G, Zhang, H, Schwieters, C.D, Perilla, J.R, Gronenborn, A.M, Polenova, T.
登録日2020-05-27
公開日2020-09-02
最終更新日2024-05-15
実験手法SOLID-STATE NMR
主引用文献Atomic-resolution structure of HIV-1 capsid tubes by magic-angle spinning NMR.
Nat.Struct.Mol.Biol., 27, 2020
6X64
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Legionella pneumophila Dot T4SS PR
分子名称: Type IV secretion system unknown protein fragment
著者Durie, C.L, Sheedlo, M.J, Chung, J.M, Byrne, B.G, Su, M, Knight, T, Swanson, M.S, Lacy, D.B, Ohi, M.D.
登録日2020-05-27
公開日2020-10-07
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural analysis of the Legionella pneumophila Dot/Icm type IV secretion system core complex.
Elife, 9, 2020
6X65
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Legionella pneumophila Dot/Icm T4SS
分子名称: DotC, DotD, Inner membrane lipoprotein YiaD, ...
著者Durie, C.L, Sheedlo, M.J, Chung, J.M, Byrne, B.G, Su, M, Knight, T, Swanson, M.S, Lacy, D.B, Ohi, M.D.
登録日2020-05-27
公開日2020-10-07
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural analysis of the Legionella pneumophila Dot/Icm type IV secretion system core complex.
Elife, 9, 2020
6X66
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Legionella pneumophila dDot T4SS OMC
分子名称: DotC, DotD, Inner membrane lipoprotein YiaD, ...
著者Durie, C.L, Sheedlo, M.J, Chung, J.M, Byrne, B.G, Su, M, Knight, T, Swanson, M.S, Lacy, D.B, Ohi, M.D.
登録日2020-05-27
公開日2020-10-28
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Structural analysis of the Legionella pneumophila Dot/Icm type IV secretion system core complex.
Elife, 9, 2020
6X6G
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Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with droperidol
分子名称: 3-[1-[4-(4-fluorophenyl)-4-oxidanylidene-butyl]-2,3,4,5-tetrahydropyridin-4-yl]-1~{H}-benzimidazol-2-one, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
著者Punetha, A, Garneau-Tsodikova, S, Tsodikov, O.V.
登録日2020-05-28
公開日2021-06-02
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structure-based design of haloperidol analogues as inhibitors of acetyltransferase Eis from Mycobacterium tuberculosis to overcome kanamycin resistance
Rsc Med Chem, 12, 2021
6X6H
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Structure of Shiga toxin 2 with a C-terminal peptide of ribosomal P stalk proteins
分子名称: 1,2-ETHANEDIOL, ACETIC ACID, CHLORIDE ION, ...
著者Rudolph, M.J.
登録日2020-05-28
公開日2020-09-09
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Structural basis for the interaction of Shiga toxin 2a with a C-terminal peptide of ribosomal P stalk proteins.
J.Biol.Chem., 295, 2020
6X6I
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Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with inhibitor SGT543
分子名称: 4-(4-benzyl-4-hydroxypiperidin-1-yl)-1-(4-fluorophenyl)butan-1-one, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Punetha, A, Garneau-Tsodikova, S, Tsodikov, O.V.
登録日2020-05-28
公開日2021-06-02
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.904 Å)
主引用文献Structure-based design of haloperidol analogues as inhibitors of acetyltransferase Eis from Mycobacterium tuberculosis to overcome kanamycin resistance
Rsc Med Chem, 12, 2021
6X6J
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Cryo-EM Structure of CagX and CagY within the Helicobacter pylori PR
分子名称: Cag pathogenicity island protein (Cag7), Cag pathogenicity island protein (Cag8)
著者Sheedlo, M.J, Chung, J.M, Sawhney, N, Durie, C.L, Cover, T.L, Ohi, M.D, Lacy, D.B.
登録日2020-05-28
公開日2020-09-30
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Cryo-EM reveals species-specific components within the Helicobacter pylori Cag type IV secretion system core complex.
Elife, 9, 2020
6X6K
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Cryo-EM Structure of the Helicobacter pylori dCag3 OMC
分子名称: Cag pathogenicity island protein, Cag pathogenicity island protein (Cag7), Type IV secretion system apparatus protein CagX
著者Sheedlo, M.J, Chung, J.M, Sawhney, N, Durie, C.L, Cover, T.L, Ohi, M.D, Lacy, D.B.
登録日2020-05-28
公開日2020-10-07
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Cryo-EM reveals species-specific components within the Helicobacter pylori Cag type IV secretion system core complex.
Elife, 9, 2020
6X6L
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Cryo-EM Structure of CagX and CagY within the dCag3 Helicobacter pylori PR
分子名称: Cag pathogenicity island protein (Cag7), Cag pathogenicity island protein (Cag8)
著者Sheedlo, M.J, Chung, J.M, Sawhney, N, Durie, C.L, Cover, T.L, Ohi, M.D, Lacy, D.B.
登録日2020-05-28
公開日2020-09-30
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Cryo-EM reveals species-specific components within the Helicobacter pylori Cag type IV secretion system core complex.
Elife, 9, 2020

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