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PDB形式変換不可の PDB エントリー
6GSK
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BU of 6gsk by Molmil
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Rozov, A, Yusupov, M, Yusupova, G.
登録日2018-06-14
公開日2018-07-04
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.36 Å)
主引用文献Tautomeric G•U pairs within the molecular ribosomal grip and fidelity of decoding in bacteria.
Nucleic Acids Res., 46, 2018
6GSL
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BU of 6gsl by Molmil
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Rozov, A, Yusupov, M, Yusupova, G.
登録日2018-06-14
公開日2018-07-04
最終更新日2025-03-19
実験手法X-RAY DIFFRACTION (3.16 Å)
主引用文献Tautomeric G•U pairs within the molecular ribosomal grip and fidelity of decoding in bacteria.
Nucleic Acids Res., 46, 2018
6GSM
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BU of 6gsm by Molmil
Structure of a partial yeast 48S preinitiation complex in open conformation.
分子名称: 18S ribosomal RNA, 40S ribosomal protein S0, 40S ribosomal protein S1, ...
著者Llacer, J.L, Hussain, T, Gordiyenko, Y, Ramakrishnan, V.
登録日2018-06-14
公開日2019-07-31
最終更新日2024-09-25
実験手法ELECTRON MICROSCOPY (5.15 Å)
主引用文献Large-scale movement of eIF3 domains during translation initiation modulate start codon selection.
Nucleic Acids Res., 2021
6GSN
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BU of 6gsn by Molmil
Structure of a partial yeast 48S preinitiation complex in closed conformation
分子名称: 18S rRNA (1798-MER), 40S ribosomal protein S0, 40S ribosomal protein S1, ...
著者Llacer, J.L, Hussain, T, Ramakrishnan, V.
登録日2018-06-14
公開日2019-06-26
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (5.75 Å)
主引用文献Large-scale movement of eIF3 domains during translation initiation modulate start codon selection.
Nucleic Acids Res., 2021
6GSR
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BU of 6gsr by Molmil
Single Particle Cryo-EM map of human Transferrin receptor 1 - H-Ferritin complex at 5.5 Angstrom resolution.
分子名称: Ferritin heavy chain, Transferrin receptor protein 1
著者Testi, C, Montemiglio, L.C, Vallone, B, Des Georges, A, Boffi, A, Mancia, F, Baiocco, P.
登録日2018-06-15
公開日2019-03-27
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (5.5 Å)
主引用文献Cryo-EM structure of the human ferritin-transferrin receptor 1 complex.
Nat Commun, 10, 2019
6GUA
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BU of 6gua by Molmil
Xylulose 5-phosphate phosphoketolase from Lactococcus lactis
分子名称: MAGNESIUM ION, PHOSPHATE ION, Probable phosphoketolase, ...
著者Scheidig, A.J, Szedlacsek, S.E.
登録日2018-06-19
公開日2019-05-22
最終更新日2024-01-17
実験手法SOLUTION SCATTERING (1.95 Å), X-RAY DIFFRACTION
主引用文献Crystal structure of a xylulose 5-phosphate phosphoketolase. Insights into the substrate specificity for xylulose 5-phosphate.
J.Struct.Biol., 207, 2019
6GWT
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BU of 6gwt by Molmil
Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Graf, M, Huter, P, Maracci, C, Peterek, M, Rodnina, M.V, Wilson, D.N.
登録日2018-06-25
公開日2018-08-15
最終更新日2025-04-09
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Visualization of translation termination intermediates trapped by the Apidaecin 137 peptide during RF3-mediated recycling of RF1.
Nat Commun, 9, 2018
6GXM
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Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Graf, M, Huter, P, Maracci, C, Peterek, M, Rodnina, M.V, Wilson, D.N.
登録日2018-06-27
公開日2018-08-22
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Visualization of translation termination intermediates trapped by the Apidaecin 137 peptide during RF3-mediated recycling of RF1.
Nat Commun, 9, 2018
6GXN
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Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Graf, M, Huter, P, Maracci, C, Peterek, M, Rodnina, M.V, Wilson, D.N.
登録日2018-06-27
公開日2018-08-15
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Visualization of translation termination intermediates trapped by the Apidaecin 137 peptide during RF3-mediated recycling of RF1.
Nat Commun, 9, 2018
6GXO
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Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Graf, M, Huter, P, Maracci, C, Peterek, M, Rodnina, M.V, Wilson, D.N.
登録日2018-06-27
公開日2018-08-15
最終更新日2025-04-09
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Visualization of translation termination intermediates trapped by the Apidaecin 137 peptide during RF3-mediated recycling of RF1.
Nat Commun, 9, 2018
6GXP
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BU of 6gxp by Molmil
Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Graf, M, Huter, P, Maracci, C, Peterek, M, Rodnina, M.V, Wilson, D.N.
登録日2018-06-27
公開日2018-08-15
最終更新日2025-04-09
実験手法ELECTRON MICROSCOPY (4.4 Å)
主引用文献Visualization of translation termination intermediates trapped by the Apidaecin 137 peptide during RF3-mediated recycling of RF1.
Nat Commun, 9, 2018
6GZ3
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BU of 6gz3 by Molmil
tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ...
著者Flis, J, Holm, M, Rundlet, E.J, Loerke, J, Hilal, T, Dabrowski, M, Buerger, J, Mielke, T, Blanchard, S.C, Spahn, C.M.T, Budkevich, T.V.
登録日2018-07-03
公開日2018-12-05
最終更新日2022-03-30
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献tRNA Translocation by the Eukaryotic 80S Ribosome and the Impact of GTP Hydrolysis.
Cell Rep, 25, 2018
6GZ4
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BU of 6gz4 by Molmil
tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, ...
著者Flis, J, Holm, M, Rundlet, E.J, Loerke, J, Hilal, T, Dabrowski, M, Buerger, J, Mielke, T, Blanchard, S.C, Spahn, C.M.T, Budkevich, T.V.
登録日2018-07-03
公開日2018-12-05
最終更新日2022-03-30
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献tRNA Translocation by the Eukaryotic 80S Ribosome and the Impact of GTP Hydrolysis.
Cell Rep, 25, 2018
6GZ5
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BU of 6gz5 by Molmil
tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, ...
著者Flis, J, Holm, M, Rundlet, E.J, Loerke, J, Hilal, T, Dabrowski, M, Buerger, J, Mielke, T, Blanchard, S.C, Spahn, C.M.T, Budkevich, T.V.
登録日2018-07-03
公開日2018-12-05
最終更新日2022-03-30
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献tRNA Translocation by the Eukaryotic 80S Ribosome and the Impact of GTP Hydrolysis.
Cell Rep, 25, 2018
6GZQ
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BU of 6gzq by Molmil
T. thermophilus hibernating 70S ribosome
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Flygaard, R.K, Jenner, L.B.
登録日2018-07-04
公開日2018-10-24
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (3.28 Å)
主引用文献Cryo-EM structure of the hibernating Thermus thermophilus 100S ribosome reveals a protein-mediated dimerization mechanism.
Nat Commun, 9, 2018
6GZX
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T. thermophilus hibernating 100S ribosome (ice)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Flygaard, R.K, Jenner, L.B.
登録日2018-07-05
公開日2018-10-24
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (4.57 Å)
主引用文献Cryo-EM structure of the hibernating Thermus thermophilus 100S ribosome reveals a protein-mediated dimerization mechanism.
Nat Commun, 9, 2018
6GZZ
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BU of 6gzz by Molmil
T. thermophilus hibernating 100S ribosome (amc)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Flygaard, R.K, Jenner, L.B.
登録日2018-07-05
公開日2018-10-24
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (4.13 Å)
主引用文献Cryo-EM structure of the hibernating Thermus thermophilus 100S ribosome reveals a protein-mediated dimerization mechanism.
Nat Commun, 9, 2018
6H03
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BU of 6h03 by Molmil
OPEN CONFORMATION OF THE MEMBRANE ATTACK COMPLEX
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Complement C5,Complement C5, ...
著者Menny, A, Serna, M, Boyd, C.M, Gardner, S, Joseph, A.P, Topf, M, Bubeck, D.
登録日2018-07-06
公開日2018-12-19
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (5.6 Å)
主引用文献CryoEM reveals how the complement membrane attack complex ruptures lipid bilayers.
Nat Commun, 9, 2018
6H4N
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BU of 6h4n by Molmil
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S1, ...
著者Beckert, B, Turk, M, Czech, A, Berninghausen, O, Beckmann, R, Ignatova, Z, Plitzko, J, Wilson, N.D.
登録日2018-07-22
公開日2018-09-05
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1.
Nat Microbiol, 3, 2018
6H58
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Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S1, ...
著者Beckert, B, Turk, M, Czech, A, Berninghausen, O, Beckmann, R, Ignatova, Z, Plitzko, J, Wilson, D.N.
登録日2018-07-24
公開日2018-09-05
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (7.9 Å)
主引用文献Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1.
Nat Microbiol, 3, 2018
6H5I
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BU of 6h5i by Molmil
Single Particle Cryo-EM map of human Transferrin receptor 1 - H-Ferritin complex.
分子名称: Ferritin heavy chain, Transferrin receptor protein 1
著者Testi, C, Montemiglio, L.C, Vallone, B, Des Georges, A, Boffi, A, Mancia, F, Baiocco, P, Savino, C.
登録日2018-07-24
公開日2019-03-27
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Cryo-EM structure of the human ferritin-transferrin receptor 1 complex.
Nat Commun, 10, 2019
6H6E
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BU of 6h6e by Molmil
PTC3 holotoxin complex from Photorhabdus luminecens in prepore state (TcdA1, TcdB2, TccC3)
分子名称: TcdA1, TcdB2,TccC3
著者Gatsogiannis, C, Merino, F, Roderer, D, Balchin, D, Schubert, E, Kuhlee, A, Hayer-Hartl, M, Raunser, S.
登録日2018-07-27
公開日2018-10-03
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.95 Å)
主引用文献Tc toxin activation requires unfolding and refolding of a beta-propeller.
Nature, 563, 2018
6H6F
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PTC3 holotoxin complex from Photorhabdus luminiscens - Mutant TcC-D651A
分子名称: TcdA1, TcdB2,TccC3,TccC3
著者Gatsogiannis, C, Merino, F, Roderer, D, Balchin, D, Schubert, E, Kuhlee, A, Hayer-Hartl, M, Raunser, S.
登録日2018-07-27
公開日2018-10-03
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.72 Å)
主引用文献Tc toxin activation requires unfolding and refolding of a beta-propeller.
Nature, 563, 2018
6H8K
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Crystal structure of a variant (Q133C in PSST) of Yarrowia lipolytica complex I
分子名称: FE2/S2 (INORGANIC) CLUSTER, IRON/SULFUR CLUSTER, NADH dehydrogenase [ubiquinone] flavoprotein 1, ...
著者Wirth, C, Galemou Yoga, E, Zickermann, V, Hunte, C.
登録日2018-08-02
公開日2018-12-26
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (3.79 Å)
主引用文献Locking loop movement in the ubiquinone pocket of complex I disengages the proton pumps.
Nat Commun, 9, 2018
6HA1
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Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Crowe-McAuliffe, C, Graf, M, Huter, P, Abdelshahid, M, Novacek, J, Wilson, D.N.
登録日2018-08-07
公開日2018-08-29
最終更新日2024-11-20
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural basis for antibiotic resistance mediated by theBacillus subtilisABCF ATPase VmlR.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018

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