Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB形式変換不可の PDB エントリー
6BBF
DownloadVisualize
BU of 6bbf by Molmil
The CRAC channel Orai in an open conformation; H206A gain-of-function mutation
分子名称: Calcium release-activated calcium channel protein 1
著者Long, S.B, Hou, X, Burstein, S.
登録日2017-10-18
公開日2018-09-12
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (6.706 Å)
主引用文献Structures reveal opening of the store-operated calcium channel Orai.
Elife, 7, 2018
6BCU
DownloadVisualize
BU of 6bcu by Molmil
Cryo-EM structure of the activated RHEB-mTORC1 refined to 3.4 angstrom
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Eukaryotic translation initiation factor 4E-binding protein 1, GTP-binding protein Rheb, ...
著者Pavletich, N.P, Yang, H.
登録日2017-10-20
公開日2017-12-20
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Mechanisms of mTORC1 activation by RHEB and inhibition by PRAS40.
Nature, 552, 2017
6BCX
DownloadVisualize
BU of 6bcx by Molmil
mTORC1 structure refined to 3.0 angstroms
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Eukaryotic translation initiation factor 4E-binding protein 1, MAGNESIUM ION, ...
著者Pavletich, N.P, Yang, H.
登録日2017-10-20
公開日2017-12-20
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.23 Å)
主引用文献Mechanisms of mTORC1 activation by RHEB and inhibition by PRAS40.
Nature, 552, 2017
6BOH
DownloadVisualize
BU of 6boh by Molmil
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Svidritskiy, E, Korostelev, A.A.
登録日2017-11-20
公開日2018-05-23
最終更新日2025-03-19
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Conformational Control of Translation Termination on the 70S Ribosome.
Structure, 26, 2018
6BOK
DownloadVisualize
BU of 6bok by Molmil
E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Svidritskiy, E, Korostelev, A.A.
登録日2017-11-20
公開日2018-05-23
最終更新日2025-03-19
実験手法X-RAY DIFFRACTION (3.55 Å)
主引用文献Conformational Control of Translation Termination on the 70S Ribosome.
Structure, 26, 2018
6BU8
DownloadVisualize
BU of 6bu8 by Molmil
70S ribosome with S1 domains 1 and 2 (Class 1)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S1, ...
著者Loveland, A.B, Korostelev, A.A.
登録日2017-12-08
公開日2018-01-31
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural dynamics of protein S1 on the 70S ribosome visualized by ensemble cryo-EM.
Methods, 137, 2018
6BUW
DownloadVisualize
BU of 6buw by Molmil
Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M.
登録日2017-12-11
公開日2018-11-14
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res., 47, 2019
6BWX
DownloadVisualize
BU of 6bwx by Molmil
Atomic resolution structure of human bufavirus 1
分子名称: VP2
著者Mietzsch, M, Agbandje-McKenna, M.
登録日2017-12-15
公開日2018-01-24
最終更新日2025-05-28
実験手法ELECTRON MICROSCOPY (2.84 Å)
主引用文献Atomic Resolution Structures of Human Bufaviruses Determined by Cryo-Electron Microscopy.
Viruses, 10, 2018
6BX0
DownloadVisualize
BU of 6bx0 by Molmil
Atomic resolution structure of human bufavirus 2
分子名称: VP2
著者Mietzsch, M, Agbandje-McKenna, M.
登録日2017-12-15
公開日2018-01-24
最終更新日2025-05-28
実験手法ELECTRON MICROSCOPY (3.79 Å)
主引用文献Atomic Resolution Structures of Human Bufaviruses Determined by Cryo-Electron Microscopy.
Viruses, 10, 2018
6BX1
DownloadVisualize
BU of 6bx1 by Molmil
Atomic resolution structure of human bufavirus 3
分子名称: VP2
著者Mietzsch, M, Agbandje-McKenna, M.
登録日2017-12-15
公開日2018-01-24
最終更新日2025-05-21
実験手法ELECTRON MICROSCOPY (3.25 Å)
主引用文献Atomic Resolution Structures of Human Bufaviruses Determined by Cryo-Electron Microscopy.
Viruses, 10, 2018
6BY1
DownloadVisualize
BU of 6by1 by Molmil
E. coli pH03H9 complex
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Amiri, H, Noller, H.F.
登録日2017-12-19
公開日2019-02-27
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (3.94 Å)
主引用文献Structural evidence for product stabilization by the ribosomal mRNA helicase.
Rna, 25, 2019
6BY7
DownloadVisualize
BU of 6by7 by Molmil
Folding DNA into a lipid-conjugated nano-barrel for controlled reconstitution of membrane proteins
分子名称: DNA (26-MER), DNA (27-MER), DNA (29-MER), ...
著者Dong, Y, Chen, S, Zhang, S, Sodroski, J, Yang, Z, Liu, D, Mao, Y.
登録日2017-12-20
公開日2018-02-28
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (7.5 Å)
主引用文献Folding DNA into a Lipid-Conjugated Nanobarrel for Controlled Reconstitution of Membrane Proteins.
Angew. Chem. Int. Ed. Engl., 57, 2018
6BZ6
DownloadVisualize
BU of 6bz6 by Molmil
Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M.
登録日2017-12-22
公開日2018-11-14
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.18 Å)
主引用文献Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res., 47, 2019
6BZ7
DownloadVisualize
BU of 6bz7 by Molmil
Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site.
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M.
登録日2017-12-22
公開日2018-11-14
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.68 Å)
主引用文献Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res., 47, 2019
6BZ8
DownloadVisualize
BU of 6bz8 by Molmil
Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M.
登録日2017-12-22
公開日2018-11-14
最終更新日2024-12-25
実験手法X-RAY DIFFRACTION (3.74 Å)
主引用文献Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res., 47, 2019
6C4I
DownloadVisualize
BU of 6c4i by Molmil
Conformation of methylated GGQ in the peptidyl transferase center during translation termination
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Zeng, F, Jin, H.
登録日2018-01-12
公開日2018-02-21
最終更新日2025-02-19
実験手法ELECTRON MICROSCOPY (3.24 Å)
主引用文献Conformation of methylated GGQ in the Peptidyl Transferase Center during Translation Termination.
Sci Rep, 8, 2018
6C50
DownloadVisualize
BU of 6c50 by Molmil
Cross-alpha Amyloid-like Structure alphaAmS
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Cross-alpha Amyloid-like Structure alphaAmS, FORMIC ACID
著者Liu, L, Zhang, S.Q.
登録日2018-01-13
公開日2018-08-15
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (2.503 Å)
主引用文献Designed peptides that assemble into cross-alpha amyloid-like structures.
Nat. Chem. Biol., 14, 2018
6C5L
DownloadVisualize
BU of 6c5l by Molmil
Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Zeng, F, Jin, H.
登録日2018-01-16
公開日2018-02-21
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Conformation of methylated GGQ in the Peptidyl Transferase Center during Translation Termination.
Sci Rep, 8, 2018
6CAE
DownloadVisualize
BU of 6cae by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Pantel, L, Florin, T, Dobosz-Bartoszek, M, Racine, E, Sarciaux, M, Serri, M, Houard, J, Campagne, J.M, Marcia de Figueiredo, R, Midrier, C, Gaudriault, S, Givaudan, A, Lanois, A, Forst, S, Aumelas, A, Cotteaux-Lautard, C, Bolla, J.M, Vingsbo Lundberg, C, Huseby, D, Hughes, D, Villain-Guillot, P, Mankin, A.S, Polikanov, Y.S, Gualtieri, M.
登録日2018-01-30
公開日2018-04-18
最終更新日2025-03-19
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Odilorhabdins, Antibacterial Agents that Cause Miscoding by Binding at a New Ribosomal Site.
Mol. Cell, 70, 2018
6CBE
DownloadVisualize
BU of 6cbe by Molmil
Atomic structure of a rationally engineered gene delivery vector, AAV2.5
分子名称: Capsid protein VP1
著者Burg, M, Rosebrough, C, Drouin, L, Bennett, A, Mietzsch, M, Chipman, P, McKenna, R, Sousa, D, Potter, M, Byrne, B, Kozyreva, O.G, Samulski, R.J, Agbandje-McKenna, M.
登録日2018-02-02
公開日2018-05-30
最終更新日2025-05-28
実験手法ELECTRON MICROSCOPY (2.78 Å)
主引用文献Atomic structure of a rationally engineered gene delivery vector, AAV2.5.
J. Struct. Biol., 203, 2018
6CDE
DownloadVisualize
BU of 6cde by Molmil
Cryo-EM structure at 3.8 A resolution of vaccine-elicited antibody vFP20.01 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoprotein 120, ...
著者Acharya, P, Xu, K, Liu, K, Carragher, B, Potter, C.S, Kwong, P.D.
登録日2018-02-08
公開日2018-05-16
最終更新日2024-12-25
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Epitope-based vaccine design yields fusion peptide-directed antibodies that neutralize diverse strains of HIV-1.
Nat. Med., 24, 2018
6CDI
DownloadVisualize
BU of 6cdi by Molmil
Cryo-EM structure at 3.6 A resolution of vaccine-elicited antibody vFP16.02 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoprotein 120, ...
著者Acharya, P, Xu, K, Liu, K, Carragher, B, Potter, C.S, Kwong, P.D.
登録日2018-02-08
公開日2018-05-16
最終更新日2024-12-25
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Epitope-based vaccine design yields fusion peptide-directed antibodies that neutralize diverse strains of HIV-1.
Nat. Med., 24, 2018
6CFJ
DownloadVisualize
BU of 6cfj by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Tereshchenkov, A.G, Dobosz-Bartoszek, M, Osterman, I.A, Marks, J, Sergeeva, V.A, Kasatsky, P, Komarova, E.S, Stavrianidi, A.N, Rodin, I.A, Konevega, A.L, Sergiev, P.V, Sumbatyan, N.V, Mankin, A.S, Bogdanov, A.A, Polikanov, Y.S.
登録日2018-02-15
公開日2018-03-07
最終更新日2025-03-19
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Binding and Action of Amino Acid Analogs of Chloramphenicol upon the Bacterial Ribosome.
J. Mol. Biol., 430, 2018
6CFK
DownloadVisualize
BU of 6cfk by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ...
著者Tereshchenkov, A.G, Dobosz-Bartoszek, M, Osterman, I.A, Marks, J, Sergeeva, V.A, Kasatsky, P, Komarova, E.S, Stavrianidi, A.N, Rodin, I.A, Konevega, A.L, Sergiev, P.V, Sumbatyan, N.V, Mankin, A.S, Bogdanov, A.A, Polikanov, Y.S.
登録日2018-02-15
公開日2018-03-07
最終更新日2025-03-19
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Binding and Action of Amino Acid Analogs of Chloramphenicol upon the Bacterial Ribosome.
J. Mol. Biol., 430, 2018
6CFL
DownloadVisualize
BU of 6cfl by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ...
著者Tereshchenkov, A.G, Dobosz-Bartoszek, M, Osterman, I.A, Marks, J, Sergeeva, V.A, Kasatsky, P, Komarova, E.S, Stavrianidi, A.N, Rodin, I.A, Konevega, A.L, Sergiev, P.V, Sumbatyan, N.V, Mankin, A.S, Bogdanov, A.A, Polikanov, Y.S.
登録日2018-02-15
公開日2018-03-07
最終更新日2025-03-19
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Binding and Action of Amino Acid Analogs of Chloramphenicol upon the Bacterial Ribosome.
J. Mol. Biol., 430, 2018

240971

件を2025-08-27に公開中

PDB statisticsPDBj update infoContact PDBjnumon