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PDB形式変換不可の PDB エントリー
8IVX
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Crystal structure of NRP2 in complex with aNRP2-14 Fab fragment
分子名称: 1,2-ETHANEDIOL, Heavy chain of antibody 14V4 Fab fragment, Light chain of antibody 14V4 Fab fragment, ...
著者Geng, Y, Zhai, L.
登録日2023-03-29
公開日2023-07-12
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Inhibition of VEGF binding to neuropilin-2 enhances chemosensitivity and inhibits metastasis in triple-negative breast cancer.
Sci Transl Med, 15, 2023
8IWF
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Aspergillus niger Rha-2 and pNPR
分子名称: (2S,3R,4R,5R,6S)-2-methyl-6-[4-[oxidanyl(oxidanylidene)-$l^4-azanyl]phenoxy]oxane-3,4,5-triol, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Li, L.J, Li, L, Wang, M.H, Jiang, Z.D, Zhu, Y.B, Jin, T.C, Ni, H.
登録日2023-03-29
公開日2024-04-03
実験手法X-RAY DIFFRACTION (2.86 Å)
主引用文献Crystal structure and catalytic function of alpha-L-rhamnosidase from Aspergillus niger
To Be Published
8IXJ
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Middle segment of the bacteriophage M13 mini variant
分子名称: Capsid protein G8P
著者Xiang, Y, Jia, Q.
登録日2023-04-01
公開日2023-08-16
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Cryo-EM structure of a bacteriophage M13 mini variant.
Nat Commun, 14, 2023
8IXL
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top segment of the bacteriophage M13 mini variant
分子名称: Capsid protein G8P, Tail virion protein G7P, Tail virion protein G9P
著者Xiang, Y, Jia, Q.
登録日2023-04-01
公開日2023-09-13
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Cryo-EM structure of a bacteriophage M13 mini variant.
Nat Commun, 14, 2023
8IYJ
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Cryo-EM structure of the 48-nm repeat doublet microtubule from mouse sperm
分子名称: Cilia and flagella-associated protein 77, Cilia- and flagella-associated protein 107, Cilia- and flagella-associated protein 141, ...
著者Zhou, L.N, Gui, M, Wu, J.P.
登録日2023-04-05
公開日2023-07-05
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structures of sperm flagellar doublet microtubules expand the genetic spectrum of male infertility.
Cell, 186, 2023
8IYK
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Tail tip conformation 1 of phage lambda tail
分子名称: IRON/SULFUR CLUSTER, Tail tip assembly protein I, Tail tip protein L, ...
著者Wang, J.W, Wang, C.
登録日2023-04-05
公開日2023-10-18
最終更新日2024-01-24
実験手法ELECTRON MICROSCOPY (2.95 Å)
主引用文献Architecture of the bacteriophage lambda tail.
Structure, 32, 2024
8IYL
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BU of 8iyl by Molmil
Tail tip conformation 2 of phage lambda tail
分子名称: IRON/SULFUR CLUSTER, Tail tip assembly protein I, Tail tip protein L, ...
著者Wang, J.W, Wang, C.
登録日2023-04-05
公開日2023-10-18
最終更新日2024-01-24
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Architecture of the bacteriophage lambda tail.
Structure, 32, 2024
8J07
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96nm repeat of human respiratory doublet microtubule and associated axonemal complexes
分子名称: ACTA2, Axonemal dynein light intermediate polypeptide 1, Calaxin, ...
著者Gui, M, Brown, A.
登録日2023-04-09
公開日2023-07-26
最終更新日2023-08-02
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Axonemal structures reveal mechanoregulatory and disease mechanisms.
Nature, 618, 2023
8J4U
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Structure of HerA-Sir2 complex from Escherichia coli Nezha system
分子名称: MAGNESIUM ION, Nucleoside triphosphate hydrolase, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
著者Chen, Q, Yu, Y.
登録日2023-04-20
公開日2024-01-03
実験手法ELECTRON MICROSCOPY (2.97 Å)
主引用文献Multiple enzymatic activities of a Sir2-HerA system cooperate for anti-phage defense.
Mol.Cell, 83, 2023
8J6K
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Crystal structure of pro-interleukin-18 and caspase-4 complex
分子名称: Arginine ADP-riboxanase OspC3, Caspase-4 subunit p10, Caspase-4 subunit p20, ...
著者Sun, Q, Hou, Y.J, Ding, J.
登録日2023-04-26
公開日2023-11-29
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.12 Å)
主引用文献Recognition and maturation of IL-18 by caspase-4 noncanonical inflammasome.
Nature, 624, 2023
8J7S
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Structure of the SPARTA complex
分子名称: DNA (5'-D(P*TP*AP*AP*TP*AP*GP*AP*TP*TP*AP*GP*AP*GP*CP*CP*GP*TP*CP*AP*AP*TP*AP*GP*A)-3'), Piwi domain-containing protein, RNA (5'-R(P*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*A)-3'), ...
著者Guo, M, Zhu, Y, Lin, Z, Huang, Z.
登録日2023-04-28
公開日2024-03-06
実験手法ELECTRON MICROSCOPY (2.84 Å)
主引用文献Cryo-EM structure of the ssDNA-activated SPARTA complex.
Cell Res., 33, 2023
8J8N
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Structure of p53 DNA-binding domain and ZNF568 KRAB domain complex
分子名称: Cellular tumor antigen p53, ZINC ION, Zinc finger protein 568
著者Han, C.W.
登録日2023-05-02
公開日2024-05-15
実験手法ELECTRON MICROSCOPY (9.02 Å)
主引用文献Structure of p53 DNA-binding domain and ZNF568 KRAB domain complex
To Be Published
8J9H
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Cryo-EM structure of Euglena gracilis respiratory complex I, deactive state
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, CARDIOLIPIN, ...
著者Wu, M.C, He, Z.X, Tian, H.T, Hu, Y.Q, Han, F.Z, Zhou, L.
登録日2023-05-03
公開日2024-02-28
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.11 Å)
主引用文献Euglena's atypical respiratory chain adapts to the discoidal cristae and flexible metabolism.
Nat Commun, 15, 2024
8J9I
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Cryo-EM structure of Euglena gracilis complex I, turnover state
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ...
著者Wu, M.C, He, Z.X, Tian, H.T, Hu, Y.Q, Han, F.Z, Zhou, L.
登録日2023-05-03
公開日2024-02-28
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (2.87 Å)
主引用文献Euglena's atypical respiratory chain adapts to the discoidal cristae and flexible metabolism.
Nat Commun, 15, 2024
8J9J
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Cryo-EM structure of Euglena gracilis complex I, NADH state
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ...
著者Wu, M.C, He, Z.X, Tian, H.T, Hu, Y.Q, Han, F.Z, Zhou, L.
登録日2023-05-03
公開日2024-02-28
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.03 Å)
主引用文献Euglena's atypical respiratory chain adapts to the discoidal cristae and flexible metabolism.
Nat Commun, 15, 2024
8JA4
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Structure of the alginate epimerase/lyase
分子名称: CALCIUM ION, DI(HYDROXYETHYL)ETHER, TRIETHYLENE GLYCOL, ...
著者Fujiwara, T.
登録日2023-05-05
公開日2024-05-08
最終更新日2024-06-26
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Structural basis for the minimal bifunctional alginate epimerase AlgE3 from Azotobacter chroococcum.
Febs Lett., 598, 2024
8JA6
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Structure of the alginate epimerase/lyase complexed with tri-mannuronic acid
分子名称: ACETATE ION, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid, ...
著者Fujiwara, T.
登録日2023-05-05
公開日2024-05-08
最終更新日2024-06-26
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis for the minimal bifunctional alginate epimerase AlgE3 from Azotobacter chroococcum.
Febs Lett., 598, 2024
8JAL
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Structure of CRL2APPBP2 bound with RxxGP degron (dimer)
分子名称: Amyloid protein-binding protein 2, Cullin-2, Elongin-B, ...
著者Zhao, S, Zhang, K, Xu, C.
登録日2023-05-06
公開日2023-10-18
最終更新日2023-10-25
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Molecular basis for C-degron recognition by CRL2 APPBP2 ubiquitin ligase.
Proc.Natl.Acad.Sci.USA, 120, 2023
8JAN
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In situ structures of the ultra-long extended tail of Myoviridae phage P1
分子名称: BplB, Gp22, Gp24
著者Zhou, J.Q, Liu, H.R.
登録日2023-05-06
公開日2023-06-21
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献In Situ Structures of the Ultra-Long Extended and Contracted Tail of Myoviridae Phage P1.
Viruses, 15, 2023
8JAU
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Structure of CRL2APPBP2 bound with the C-degron of MRPL28 (dimer)
分子名称: Amyloid protein-binding protein 2, Cullin-2, Elongin-B, ...
著者Zhao, S, Zhang, K, Xu, C.
登録日2023-05-07
公開日2023-10-18
最終更新日2023-10-25
実験手法ELECTRON MICROSCOPY (3.22 Å)
主引用文献Molecular basis for C-degron recognition by CRL2 APPBP2 ubiquitin ligase.
Proc.Natl.Acad.Sci.USA, 120, 2023
8JAZ
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Structure of the alginate epimerase/lyase complexed with di-mannuronic acid
分子名称: CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid, mannuronan 5-epimerase
著者Fujiwara, T.
登録日2023-05-07
公開日2024-05-08
最終更新日2024-06-26
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Structural basis for the minimal bifunctional alginate epimerase AlgE3 from Azotobacter chroococcum.
Febs Lett., 598, 2024
8JBG
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Neurokinin B bound to active human neurokinin 3 receptor in complex with Gq
分子名称: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein Gq (G324), ...
著者Sun, W.J, Yang, F, Zhang, H.H, Yuan, Q.N, Yin, W.C, Shi, P, Eric, X, Tian, C.L.
登録日2023-05-08
公開日2024-02-07
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structural insights into neurokinin 3 receptor activation by endogenous and analogue peptide agonists.
Cell Discov, 9, 2023
8JBH
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Substance P bound to active human neurokinin 3 receptor in complex with Gq
分子名称: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein Gq subunit alpha (G324), ...
著者Sun, W.J, Yang, F, Zhang, H.H, Yuan, Q.N, Yin, W.C, Shi, P, Eric, X, Tian, C.L.
登録日2023-05-08
公開日2024-02-07
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structural insights into neurokinin 3 receptor activation by endogenous and analogue peptide agonists.
Cell Discov, 9, 2023
8JBZ
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Crystal structure of 3-ketosteroid delta1-dehydrogenase from Rhodococcus erythropolis SQ1 in complex with 4-androstadiene-3,17- dione
分子名称: 3-ketosteroid dehydrogenase, 4-ANDROSTENE-3-17-DIONE, FLAVIN-ADENINE DINUCLEOTIDE
著者Hu, Y.L, Li, X, Cheng, X.Y, Song, S.K, Su, Z.D.
登録日2023-05-10
公開日2023-05-31
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.079 Å)
主引用文献Crystal structure of 3-ketosteroid delta1-dehydrogenase from Rhodococcus erythropolis SQ1 in complex with 4-androstadiene-3,17- dione
To Be Published
8JDJ
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Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
著者Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
登録日2023-05-14
公開日2023-12-06
最終更新日2023-12-27
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.
Cell, 186, 2023

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件を2024-10-09に公開中

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