PDB形式変換不可の PDB エントリー

8G61	mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state) 分子名称: 1,4-DIAMINOBUTANE, 18S rRNA, 28S rRNA, ... 著者 Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Altman, R.B, Blanchard, S.C. 登録日 2023-02-14 公開日 2023-04-19 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.94 Å) 主引用文献 mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023
8G6C	GTP Cyclohydrolase-IB with manganese 分子名称: 1,2-ETHANEDIOL, GTP cyclohydrolase FolE2, MANGANESE (II) ION 著者 McWhorter, K.L, Amaya Lopez, C.Y, Davis, K.M. 登録日 2023-02-14 公開日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.82 Å) 主引用文献 Combatting melioidosis with chemical synthetic lethality To Be Published
8G6J	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2) 分子名称: (3R,6R,9S,12S,15S,18S,20R,24aR)-6-[(2S)-butan-2-yl]-3,12-bis[(1R)-1-hydroxy-2-methylpropyl]-8,9,11,17,18-pentamethyl-15-[(2S)-2-methylbutyl]hexadecahydropyrido[1,2-a][1,4,7,10,13,16,19]heptaazacyclohenicosine-1,4,7,10,13,16,19(21H)-heptone, (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine, 1,4-DIAMINOBUTANE, ... 著者 Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Altman, R.B, Blanchard, S.C. 登録日 2023-02-15 公開日 2023-04-19 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023
8G6W	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe 分子名称: 16S rRNA, 2-AMINO-BENZAMIDE, 23S rRNA, ... 著者 Majumdar, C, Cate, J.H.D. 登録日 2023-02-16 公開日 2023-04-05 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.02 Å) 主引用文献 Aminobenzoic Acid Derivatives Obstruct Induced Fit in the Catalytic Center of the Ribosome. Acs Cent.Sci., 9, 2023
8G71	Spike/Nb2 complex with 1 RBD up 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein 著者 Ye, G, Bu, F, Liu, B, Li, F. 登録日 2023-02-16 公開日 2024-02-21 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (2.1 Å) 主引用文献 SARS-CoV-2 spike/Nb2 complex with 1 RBD up To Be Published
8G79	Local refinement of SARS-CoV-2 spike/nanobody mixture complex around RBD 分子名称: Nanosota-3, Nanosota-4, Spike glycoprotein 著者 Ye, G, Bu, F, Liu, B, Li, F. 登録日 2023-02-16 公開日 2024-02-21 最終更新日 2024-11-06 実験手法 ELECTRON MICROSCOPY (6.1 Å) 主引用文献 Local refinement of SARS-CoV-2 spike/nanobody mixture complex around RBD To Be Published
8G7P	Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I) 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rybak, M.Y, Gagnon, M.G. 登録日 2023-02-16 公開日 2024-03-06 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance. Nat.Struct.Mol.Biol., 31, 2024
8G7Q	Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II) 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rybak, M.Y, Gagnon, M.G. 登録日 2023-02-16 公開日 2024-03-06 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance. Nat.Struct.Mol.Biol., 31, 2024
8G7R	Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III) 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rybak, M.Y, Gagnon, M.G. 登録日 2023-02-16 公開日 2024-03-06 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance. Nat.Struct.Mol.Biol., 31, 2024
8G7S	Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV) 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rybak, M.Y, Gagnon, M.G. 登録日 2023-02-16 公開日 2024-03-06 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance. Nat.Struct.Mol.Biol., 31, 2024
8G8P	F420-2/GTP(GDP) complex of F420-gamma glutamyl ligase (CofE) from Archaeoglobus fulgidus 分子名称: COENZYME F420, Coenzyme F420:L-glutamate ligase, GUANOSINE-5'-DIPHOSPHATE, ... 著者 Bashiri, G, Squire, C.J. 登録日 2023-02-18 公開日 2024-02-28 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 Poly-gamma-glutamylation of biomolecules. Nat Commun, 15, 2024
8GBS	Integrative model of the native Ana GV shell 分子名称: Gas vesicle protein C, Gas vesicle structural protein 著者 Dutka, P, Metskas, L.A, Hurt, R.C, Salahshoor, H, Wang, T.U, Malounda, D, Lu, G, Chou, T.F, Shapiro, M.G, Jensen, J.J. 登録日 2023-02-28 公開日 2023-04-19 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (8 Å) 主引用文献 Structure of Anabaena flos-aquae gas vesicles revealed by cryo-ET. Structure, 31, 2023
8GCG	MDM2 bound to inhibitor 分子名称: E3 ubiquitin-protein ligase Mdm2, macrocyclic peptide inhibitor 著者 Silvestri, A.P, Muir, E.W, Chakka, S.K, Tripathi, S.M, Rubin, S.M, Pye, C.R, Schwochert, J.A. 登録日 2023-03-01 公開日 2024-10-23 実験手法 X-RAY DIFFRACTION (1.47 Å) 主引用文献 DNA-Encoded Macrocyclic Peptide Libraries Enable the Discovery of a Neutral MDM2-p53 Inhibitor. Acs Med.Chem.Lett., 14, 2023
8GDW	Crystal structure of Domain Related to Iron (DRI) from cyanobacteria 分子名称: Ssr1698 protein, ZINC ION 著者 Kumaran, D, Grosjean, N, Blaby, E.C. 登録日 2023-03-06 公開日 2024-03-13 最終更新日 2024-04-24 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria. Nat Commun, 15, 2024
8GH6	Bombyx mori R2 retrotransposon initiating target-primed reverse transcription 分子名称: 28S DNA bottom strand, 3' side, 5' side (priming strand), ... 著者 Wilkinson, M.E, Zhang, F. 登録日 2023-03-09 公開日 2023-04-05 最終更新日 2023-08-16 実験手法 ELECTRON MICROSCOPY (3.08 Å) 主引用文献 Structure of the R2 non-LTR retrotransposon initiating target-primed reverse transcription. Science, 380, 2023
8GJ1	E. coli clamp loader with open clamp on primed template DNA (form 2) 分子名称: ADENOSINE-5'-DIPHOSPHATE, Beta sliding clamp, DNA polymerase III subunit delta, ... 著者 Oakley, A.J, Xu, Z.-Q, Dixon, N.E. 登録日 2023-03-14 公開日 2024-03-27 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural characterisation of the complete cycle of sliding clamp loading in Escherichia coli. Nat Commun, 15, 2024
8GJD	X-ray crystallographic structure of a beta-hairpin peptide derived from Abeta 17-36. (ORN)LVFFAED(ORN)AII(N-Me-Gly)LMV 分子名称: Beta-hairpin peptide derived from Abeta 17-36, IODIDE ION 著者 Kreutzer, A.G, Ruttenberg, S.M, Nowick, J.S, Truex, N.L. 登録日 2023-03-15 公開日 2024-01-17 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.03 Å) 主引用文献 beta-Hairpin Alignment Alters Oligomer Formation in A beta-Derived Peptides. Biochemistry, 63, 2024
8GJM	17b10 fab in complex with full-length SARS-CoV-2 Spike G614 trimer 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Kwon, H.J, Zhang, J, Kosikova, M, Tang, W.C, Rodriguez, U.O, Peng, H.Q, Meseda, C.A, Pedro, C.L, Schmeisser, F, Lu, J.M, Zhou, B, Davis, C.T, Wentworth, D.E, Chen, W.H, Shriver, M.C, Pasetti, M.F, Weir, J.P, Chen, B, Xie, H. 登録日 2023-03-16 公開日 2023-04-05 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Distinct in vitro and in vivo neutralization profiles of monoclonal antibodies elicited by the receptor binding domain of the ancestral SARS-CoV-2. J Med Virol, 95, 2023
8GL6	The Type 9 Secretion System in vitro assembled, RemA-CTD substrate bound complex 分子名称: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Protein involved in gliding motility SprA, ... 著者 Deme, J.C, Lea, S.M. 登録日 2023-03-21 公開日 2024-01-31 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 The Type 9 Secretion System caught in the act of transport Nat Microbiol, 2024
8GL8	The Type 9 Secretion System Extended Translocon - SprA-PorV-PPI-RemZ-SkpA-SprE complex 分子名称: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Periplasmic chaperone for outer membrane proteins Skp, ... 著者 Deme, J.C, Lea, S.M. 登録日 2023-03-21 公開日 2024-01-31 最終更新日 2024-11-06 実験手法 ELECTRON MICROSCOPY (2.2 Å) 主引用文献 The Type 9 Secretion System caught in the act of transport Nat Microbiol, 2024
8GLJ	The Type 9 Secretion System in vitro assembled, FspA-CTD substrate bound complex 分子名称: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Por secretion system C-terminal sorting domain-containing protein, ... 著者 Deme, J.C, Lea, S.M. 登録日 2023-03-22 公開日 2024-01-31 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 The Type 9 Secretion System caught in the act of transport Nat Microbiol, 2024
8GLK	The Type 9 Secretion System dGldL peak II, NucA substrate bound complex 分子名称: Endonuclease I, Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, ... 著者 Deme, J.C, Lea, S.M. 登録日 2023-03-22 公開日 2024-01-31 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 The Type 9 Secretion System caught in the act of transport Nat Microbiol, 2024
8GLM	The Type 9 Secretion System in vivo assembled, RemZ substrate bound complex - conformation 1 分子名称: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Protein involved in gliding motility SprA, ... 著者 Deme, J.C, Lea, S.M. 登録日 2023-03-22 公開日 2024-01-31 実験手法 ELECTRON MICROSCOPY (2.2 Å) 主引用文献 The Type 9 Secretion System caught in the act of transport Nat Microbiol, 2024
8GLN	The Type 9 Secretion System in vivo assembled, RemZ substrate bound complex - conformation 2 分子名称: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Protein involved in gliding motility SprA, ... 著者 Deme, J.C, Lea, S.M. 登録日 2023-03-22 公開日 2024-01-31 実験手法 ELECTRON MICROSCOPY (2.2 Å) 主引用文献 The Type 9 Secretion System caught in the act of transport Nat Microbiol, 2024
8GLP	mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) 分子名称: 1,4-DIAMINOBUTANE, 18S rRNA, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ... 著者 Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Watson, Z.L, Altman, R.B, Blanchard, S.C. 登録日 2023-03-22 公開日 2023-04-19 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (1.67 Å) 主引用文献 mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023

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