PDB形式変換不可の PDB エントリー

8D9U	AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated narrow membrane tubes, centered on beta-Arf1 分子名称: ADP-ribosylation factor 1, AP-1 complex subunit beta-1, AP-1 complex subunit gamma-1, ... 著者 Hooy, R.M, Hurley, J.H. 登録日 2022-06-11 公開日 2022-11-09 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (20 Å) 主引用文献 Self-assembly and structure of a clathrin-independent AP-1:Arf1 tubular membrane coat. Sci Adv, 8, 2022
8D9V	gamma-Arf1 homodimeric interface within AP-1, Arf1, Nef lattice on narrow membrane tubes 分子名称: ADP ribosylation factor 1, AP-1 complex subunit beta-1, AP-1 complex subunit gamma-1, ... 著者 Hooy, R.M, Hurley, J.H. 登録日 2022-06-11 公開日 2022-11-09 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (9.4 Å) 主引用文献 Self-assembly and structure of a clathrin-independent AP-1:Arf1 tubular membrane coat. Sci Adv, 8, 2022
8D9W	beta-Arf1 homodimeric interface within AP-1, Arf1, Nef, MHC-I lattice on narrow tubes 分子名称: ADP-ribosylation factor 1, AP-1 complex subunit beta-1, AP-1 complex subunit gamma-1, ... 著者 Hooy, R.H, Hurley, J.H. 登録日 2022-06-11 公開日 2023-07-05 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (9.3 Å) 主引用文献 Self-assembly and structure of a clathrin-independent AP-1:Arf1 tubular membrane coat. Sci Adv, 8, 2022
8DAP	[GA/TC] Self-Assembled 3D DNA Tensegrity Triangle with 24 bp Arm Length forming a Trigonal Hexagon 分子名称: DNA (5'-D(*GP*AP*GP*CP*CP*TP*AP*CP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*AP*G)-3'), DNA (5'-D(*TP*CP*CP*TP*GP*AP*TP*GP*TP*GP*GP*CP*TP*AP*GP*GP*C)-3'), DNA (5'-D(P*TP*AP*CP*AP*CP*CP*GP*TP*AP*CP*AP*CP*CP*GP*TP*AP*CP*AP*CP*CP*G)-3') 著者 Lu, B, Vecchioni, S, Ohayon, Y.P, Seeman, N.C, Mao, C, Sha, R. 登録日 2022-06-13 公開日 2023-01-25 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (6.47 Å) 主引用文献 Highly Symmetric, Self-Assembling 3D DNA Crystals with Cubic and Trigonal Lattices. Small, 19, 2023
8DBP	E. coli ATP synthase imaged in 10mM MgATP State1 "half-up 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... 著者 Sobti, M, Stewart, A.G. 登録日 2022-06-14 公開日 2023-01-25 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP. Commun Biol, 6, 2023
8DBQ	E. coli ATP synthase imaged in 10mM MgATP State1 "half-up" Fo classified 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... 著者 Sobti, M, Stewart, A.G. 登録日 2022-06-14 公開日 2023-01-25 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP. Commun Biol, 6, 2023
8DBR	E. coli ATP synthase imaged in 10mM MgATP State2 "half-up 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... 著者 Sobti, M, Stewart, A.G. 登録日 2022-06-14 公開日 2023-01-25 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP. Commun Biol, 6, 2023
8DBT	E. coli ATP synthase imaged in 10mM MgATP State2 "down 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... 著者 Sobti, M, Stewart, A.G. 登録日 2022-06-14 公開日 2023-01-25 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP. Commun Biol, 6, 2023
8DBU	E. coli ATP synthase imaged in 10mM MgATP State2 "down" Fo classified 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... 著者 Sobti, M, Stewart, A.G. 登録日 2022-06-14 公開日 2023-01-25 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP. Commun Biol, 6, 2023
8DBV	E. coli ATP synthase imaged in 10mM MgATP State3 "down 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... 著者 Sobti, M, Stewart, A.G. 登録日 2022-06-14 公開日 2023-01-25 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP. Commun Biol, 6, 2023
8DBW	E. coli ATP synthase imaged in 10mM MgATP State3 "down" Fo classified 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... 著者 Sobti, M, Stewart, A.G. 登録日 2022-06-14 公開日 2023-01-25 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP. Commun Biol, 6, 2023
8DCM	Crystal structure of Clostridioides difficile binary toxin proCDTb lacking D4 in complex with BINTOXB/22 Fab 分子名称: ADP-ribosylating binary toxin binding subunit CdtB, BINTOXB/22 Fab heavy chain, BINTOXB/22 Fab light chain, ... 著者 Goldsmith, J.A, McLellan, J.S. 登録日 2022-06-16 公開日 2023-04-05 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural Basis for Binding of Neutralizing Antibodies to Clostridioides difficile Binary Toxin. J.Bacteriol., 205, 2023
8DD3	Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus DMCM 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GAMMA-AMINO-BUTANOIC ACID, ... 著者 Zhu, S, Hibbs, R.E. 登録日 2022-06-17 公開日 2022-08-17 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural and dynamic mechanisms of GABA A receptor modulators with opposing activities. Nat Commun, 13, 2022
8DE6	Oligomeric C9 in complex with aE11 Fab 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Complement component C9, ... 著者 Bayly-Jones, C. 登録日 2022-06-20 公開日 2023-01-25 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 The neoepitope of the complement C5b-9 Membrane Attack Complex is formed by proximity of adjacent ancillary regions of C9. Commun Biol, 6, 2023
8DHX	Human liver ferritin 分子名称: Ferritin heavy chain 著者 Zhang, Z. 登録日 2022-06-28 公開日 2023-07-12 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (2.92 Å) 主引用文献 Human liver ferritin To Be Published
8DLI	Cryo-EM structure of SARS-CoV-2 Alpha (B.1.1.7) spike protein 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein 著者 Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Subramaniam, S. 登録日 2022-07-08 公開日 2022-08-31 実験手法 ELECTRON MICROSCOPY (2.56 Å) 主引用文献 SARS-CoV-2 variants of concern: spike protein mutational analysis and epitope for broad neutralization. Nat Commun, 13, 2022
8DLT	Cryo-EM structure of SARS-CoV-2 Epsilon (B.1.429) spike protein 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein 著者 Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Subramaniam, S. 登録日 2022-07-08 公開日 2022-08-31 実験手法 ELECTRON MICROSCOPY (2.4 Å) 主引用文献 SARS-CoV-2 variants of concern: spike protein mutational analysis and epitope for broad neutralization. Nat Commun, 13, 2022
8DLU	Cryo-EM structure of SARS-CoV-2 Epsilon (B.1.429) spike protein in complex with human ACE2 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... 著者 Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Subramaniam, S. 登録日 2022-07-08 公開日 2022-08-31 実験手法 ELECTRON MICROSCOPY (3.14 Å) 主引用文献 SARS-CoV-2 variants of concern: spike protein mutational analysis and epitope for broad neutralization. Nat Commun, 13, 2022
8DLX	Cryo-EM structure of SARS-CoV-2 Epsilon (B.1.429) spike protein in complex with VH ab6 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ... 著者 Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Subramaniam, S. 登録日 2022-07-08 公開日 2022-08-31 実験手法 ELECTRON MICROSCOPY (2.45 Å) 主引用文献 SARS-CoV-2 variants of concern: spike protein mutational analysis and epitope for broad neutralization. Nat Commun, 13, 2022
8DLZ	Cryo-EM structure of SARS-CoV-2 D614G spike protein in complex with VH ab6 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ... 著者 Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Subramaniam, S. 登録日 2022-07-08 公開日 2022-08-31 実験手法 ELECTRON MICROSCOPY (2.57 Å) 主引用文献 SARS-CoV-2 variants of concern: spike protein mutational analysis and epitope for broad neutralization. Nat Commun, 13, 2022
8DN3	Cryo-EM structure of human Glycine Receptor alpha1-beta heteromer, apo state 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, DECANE, ... 著者 Liu, X, Wang, W. 登録日 2022-07-10 公開日 2023-10-11 最終更新日 2023-11-01 実験手法 ELECTRON MICROSCOPY (3.55 Å) 主引用文献 Asymmetric gating of a human hetero-pentameric glycine receptor. Nat Commun, 14, 2023
8DNT	SARS-CoV-2 specific T cell receptor 分子名称: Beta-2-microglobulin, MHC class I antigen alpha chain, Nucleoprotein, ... 著者 Gallagher, D.T, Wu, D, Gowthaman, R, Pierce, B.G, Mariuzza, R.A, Weng, N.P. 登録日 2022-07-11 公開日 2023-07-19 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.18 Å) 主引用文献 SARS-CoV-2 infection establishes a stable and age-independent CD8 + T cell response against a dominant nucleocapsid epitope using restricted T cell receptors. Nat Commun, 14, 2023
8DP1	Cryo-EM structure of HIV-1 Env(BG505.T332N SOSIP) in complex with DH1030.1 Fab 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DH1030.1 Fab Heavy chain, ... 著者 Gobeil, S, Acharya, P. 登録日 2022-07-14 公開日 2023-07-19 実験手法 ELECTRON MICROSCOPY (3.46 Å) 主引用文献 Shared recognition mechanism for HIV-1 envelope-reactive V3 glycan broadly neutralizing B cell lineage maturation in humans and macaques To Be Published
8DP8	Crystal structure of the monomeric AvrM14-A Nudix hydrolase effector from Melampsora lini 分子名称: AvrM14-A 著者 McCombe, C.L, Outram, M.A, Ericsson, D.J, Williams, S.J. 登録日 2022-07-15 公開日 2023-01-25 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.30001006071 Å) 主引用文献 A rust-fungus Nudix hydrolase effector decaps mRNA in vitro and interferes with plant immune pathways. New Phytol., 239, 2023
8DP9	Crystal structure of the monomeric AvrM14-B Nudix hydrolase effector from Melampsora lini 分子名称: AvrM14-B, SULFATE ION 著者 McCombe, C.L, Outram, M.A, Ericsson, D.J, Williams, S.J. 登録日 2022-07-15 公開日 2023-01-25 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 A rust-fungus Nudix hydrolase effector decaps mRNA in vitro and interferes with plant immune pathways. New Phytol., 239, 2023

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