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PDB形式変換不可の PDB エントリー
8ATX
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Cryo-EM structure of human BIRC6 - no substrate
分子名称: Baculoviral IAP repeat-containing protein 6, ZINC ION
著者Ehrmann, J.F, Grabarczyk, D.B, Clausen, T.
登録日2022-08-24
公開日2023-02-15
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (7 Å)
主引用文献Structural basis for regulation of apoptosis and autophagy by the BIRC6/SMAC complex.
Science, 379, 2023
8AU1
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BU of 8au1 by Molmil
Jumbo Phage phi-kp24 tail outer sheath
分子名称: Putative tail sheath protein
著者Ouyang, R, Briegel, A.
登録日2022-08-25
公開日2022-12-14
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献High-resolution reconstruction of a Jumbo-bacteriophage infecting capsulated bacteria using hyperbranched tail fibers.
Nat Commun, 13, 2022
8AUK
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Cryo-EM structure of human BIRC6 in complex with HTRA2.
分子名称: Baculoviral IAP repeat-containing protein 6, Serine protease HTRA2, mitochondrial, ...
著者Ehrmann, J.F, Grabarczyk, D.B, Clausen, T.
登録日2022-08-25
公開日2023-02-15
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (6.2 Å)
主引用文献Structural basis for regulation of apoptosis and autophagy by the BIRC6/SMAC complex.
Science, 379, 2023
8AUV
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Cryo-EM structure of the plant 40S subunit
分子名称: 18S rRNA, MAGNESIUM ION, POTASSIUM ION, ...
著者Smirnova, J, Loerke, J, Kleinau, G, Schmidt, A, Buerger, J, Meyer, E.H, Mielke, T, Scheerer, P, Bock, R, Spahn, C.M.T, Zoschke, R.
登録日2022-08-25
公開日2023-06-07
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.38 Å)
主引用文献Structure of the actively translating plant 80S ribosome at 2.2 angstrom resolution.
Nat.Plants, 9, 2023
8AUW
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Cryo-EM structure of human BIRC6 in complex with SMAC.
分子名称: Baculoviral IAP repeat-containing protein 6, Diablo IAP-binding mitochondrial protein, ZINC ION
著者Ehrmann, J.F, Grabarczyk, D.B, Clausen, T.
登録日2022-08-25
公開日2023-02-15
最終更新日2023-05-24
実験手法ELECTRON MICROSCOPY (7.2 Å)
主引用文献Structural basis for regulation of apoptosis and autophagy by the BIRC6/SMAC complex.
Science, 379, 2023
8AVB
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Cryo-EM structure for mouse leptin in complex with the mouse LEP-R ectodomain (1:2 mLEP:mLEPR model).
分子名称: Leptin, Leptin receptor
著者Verstraete, K, Savvides, S.N, Verschueren, K.G, Tsirigotaki, A.
登録日2022-08-26
公開日2023-04-05
最終更新日2023-07-26
実験手法ELECTRON MICROSCOPY (4.43 Å)
主引用文献Mechanism of receptor assembly via the pleiotropic adipokine Leptin.
Nat.Struct.Mol.Biol., 30, 2023
8AWK
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BU of 8awk by Molmil
Structure of recombinant human beta-glucocerebrosidase in complex with D-carbaxylosyl chloride
分子名称: (2~{S},3~{S},4~{R})-cyclohex-5-ene-1,2,3,4-tetrol, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Rowland, R.J, Davies, G.J.
登録日2022-08-30
公開日2024-03-13
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Single turnover covalent inhibitors for functional chaperoning of lysosomal glycoside hydrolases
To be published
8AWR
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Structure of recombinant human beta-glucocerebrosidase in complex with L-carbaxylosyl chloride
分子名称: (1~{S},2~{R},3~{S},6~{S})-6-chloranylcyclohex-4-ene-1,2,3-triol, (1~{S},2~{S},3~{S},4~{R})-cyclohexane-1,2,3,4-tetrol, 1,2-ETHANEDIOL, ...
著者Rowland, R.J, Davies, G.J.
登録日2022-08-30
公開日2024-03-13
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Single turnover covalent inhibitors for functional chaperoning of lysosomal glycoside hydrolases
To be published
8AXG
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Crystal structure of Fusobacterium nucleatum fusolisin protease
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Fusolisin, ...
著者Isupov, M.N, Wiener, R, Rouvinski, A, Fahoum, J, Kumar, M, Read, R.J.
登録日2022-08-31
公開日2023-09-13
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Crystal structure of Fusobacterium nucleatum fusolisin protease
To Be Published
8AXK
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BU of 8axk by Molmil
Type 3 secretion system export apparatus core, inner rod and needle of Shigella flexneri
分子名称: Lipoprotein MxiJ, Outer membrane protein MxiD, Protein MxiH, ...
著者Lunelli, M.
登録日2022-08-31
公開日2023-03-01
最終更新日2023-04-12
実験手法ELECTRON MICROSCOPY (4.05 Å)
主引用文献Integrative structural analysis of the type III secretion system needle complex from Shigella flexneri.
Protein Sci., 32, 2023
8AXL
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Outer membrane secretin pore of the type 3 secretion system of Shigella flexneri
分子名称: Outer membrane protein MxiD
著者Lunelli, M.
登録日2022-08-31
公開日2023-03-01
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.42 Å)
主引用文献Integrative structural analysis of the type III secretion system needle complex from Shigella flexneri.
Protein Sci., 32, 2023
8AXN
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BU of 8axn by Molmil
Inner membrane ring and secretin N0 N1 domains of the type 3 secretion system of Shigella flexneri
分子名称: Lipoprotein MxiJ, Outer membrane protein MxiD, Protein MxiG
著者Lunelli, M.
登録日2022-08-31
公開日2023-03-01
最終更新日2023-04-12
実験手法ELECTRON MICROSCOPY (3.34 Å)
主引用文献Integrative structural analysis of the type III secretion system needle complex from Shigella flexneri.
Protein Sci., 32, 2023
8AYD
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BU of 8ayd by Molmil
Anammox-specific FabZ from the annamox bacterium Kuenenia stuttgartiensis
分子名称: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ
著者Dietl, A, Barends, T.
登録日2022-09-02
公開日2023-03-29
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structures of an unusual 3-hydroxyacyl dehydratase (FabZ) from a ladderane-producing organism with an unexpected substrate preference.
J.Biol.Chem., 299, 2023
8AYE
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BU of 8aye by Molmil
E. coli 70S ribosome bound to thermorubin and fMet-tRNA
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Sanyal, S, Parajuli, N.P, Emmerich, A.G.
登録日2022-09-02
公開日2023-03-01
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (1.96 Å)
主引用文献Antibiotic thermorubin tethers ribosomal subunits and impedes A-site interactions to perturb protein synthesis in bacteria.
Nat Commun, 14, 2023
8AZW
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BU of 8azw by Molmil
Cryo-EM structure of the plant 60S subunit
分子名称: 25S rRNA, 5.8S rRNA, 5S rRNA, ...
著者Smirnova, J, Loerke, J, Kleinau, G, Schmidt, A, Buerger, J, Meyer, E.H, Mielke, T, Scheerer, P, Bock, R, Spahn, C.M.T, Zoschke, R.
登録日2022-09-06
公開日2023-06-07
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (2.14 Å)
主引用文献Structure of the actively translating plant 80S ribosome at 2.2 angstrom resolution.
Nat.Plants, 9, 2023
8B0B
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BU of 8b0b by Molmil
Crystal structure of human heparanase in complex with covalent inhibitor VB151
分子名称: (1~{S},2~{R},3~{R},4~{S},6~{S})-2-(2-acetamidoethoxy)-3,4,6-tris(oxidanyl)cyclohexane-1-carboxylic acid, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Armstrong, Z, Davies, G.J.
登録日2022-09-07
公開日2022-12-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献4-O-Substituted Glucuronic Cyclophellitols are Selective Mechanism-Based Heparanase Inhibitors.
Chemmedchem, 18, 2023
8B0C
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BU of 8b0c by Molmil
Crystal structure of human heparanase in complex with covalent inhibitor VB158
分子名称: (1~{S},2~{R},3~{R},4~{S},6~{S})-3,4,6-tris(oxidanyl)-2-[2-[2,2,2-tris(fluoranyl)ethanoylamino]ethoxy]cyclohexane-1-carboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, Heparanase 50 kDa subunit, ...
著者Armstrong, Z, Davies, G.
登録日2022-09-07
公開日2022-12-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献4-O-Substituted Glucuronic Cyclophellitols are Selective Mechanism-Based Heparanase Inhibitors.
Chemmedchem, 18, 2023
8B0D
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BU of 8b0d by Molmil
Crystal structure of beta-glucuronidase from Acidobacterium capsulatum in complex with covalent inhibitor VB151
分子名称: (1~{S},2~{R},3~{R},4~{S},6~{S})-2-(2-acetamidoethoxy)-3,4,6-tris(oxidanyl)cyclohexane-1-carboxylic acid, ALANINE, SULFATE ION, ...
著者Armstrong, Z, Davies, G.J.
登録日2022-09-07
公開日2022-12-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献4-O-Substituted Glucuronic Cyclophellitols are Selective Mechanism-Based Heparanase Inhibitors.
Chemmedchem, 18, 2023
8B0E
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BU of 8b0e by Molmil
Crystal structure of beta-glucuronidase from Acidobacterium capsulatum in complex with covalent inhibitor VB158
分子名称: (1~{S},2~{R},3~{R},4~{S},6~{S})-3,4,6-tris(oxidanyl)-2-[2-[2,2,2-tris(fluoranyl)ethanoylamino]ethoxy]cyclohexane-1-carboxylic acid, beta-glucuronidase from Acidobacterium capsulatum
著者Armstrong, Z, Davies, G.J.
登録日2022-09-07
公開日2022-12-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献4-O-Substituted Glucuronic Cyclophellitols are Selective Mechanism-Based Heparanase Inhibitors.
Chemmedchem, 18, 2023
8B0F
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CryoEM structure of C5b8-CD59
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Bubeck, D, Couves, E.C, Gardner, S.
登録日2022-09-07
公開日2023-02-22
最終更新日2023-03-01
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structural basis for membrane attack complex inhibition by CD59.
Nat Commun, 14, 2023
8B0G
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2C9, C5b9-CD59 structure
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CD59 glycoprotein, Complement C5, ...
著者Couves, E.C, Gardner, S, Bubeck, D.
登録日2022-09-07
公開日2023-02-22
最終更新日2023-03-01
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural basis for membrane attack complex inhibition by CD59.
Nat Commun, 14, 2023
8B0H
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BU of 8b0h by Molmil
2C9, C5b9-CD59 cryoEM structure
分子名称: CD59 glycoprotein, Complement C5, Complement component C6, ...
著者Couves, E.C, Gardner, S, Bubeck, D.
登録日2022-09-07
公開日2023-02-22
最終更新日2023-03-01
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural basis for membrane attack complex inhibition by CD59.
Nat Commun, 14, 2023
8B0X
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Translating 70S ribosome in the unrotated state (P and E, tRNAs)
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Fromm, S.A, O'Connor, K.M, Purdy, M, Bhatt, P.R, Loughran, G, Atkins, J.F, Jomaa, A, Mattei, S.
登録日2022-09-08
公開日2022-11-30
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (1.55 Å)
主引用文献The translating bacterial ribosome at 1.55 angstrom resolution generated by cryo-EM imaging services.
Nat Commun, 14, 2023
8B2A
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BU of 8b2a by Molmil
Crystal structure of type I dehydroquinase from Salmonella typhi inhibited by an epoxide derivative
分子名称: (4R,5R)-3-amino-4,5-dihydroxy-cyclohexene-1-carboxylic acid, 3-dehydroquinate dehydratase, CHLORIDE ION, ...
著者Otero, J.M, Rodriguez, A, Maneiro, M, Lence, E, Thompson, P, Hawkins, A.R, Gonzalez-Bello, C, van Raaij, M.J.
登録日2022-09-13
公開日2023-02-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Quinate-based ligands for irreversible inactivation of the bacterial virulence factor DHQ1 enzyme-A molecular insight.
Front Mol Biosci, 10, 2023
8B2B
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Crystal structure of type I dehydroquinase from Salmonella typhi inhibited by an epoxide derivative
分子名称: (4R,5R)-3-amino-4,5-dihydroxy-cyclohexene-1-carboxylic acid, 3-dehydroquinate dehydratase, SODIUM ION
著者Otero, J.M, Rodriguez, A, Maneiro, M, Lence, E, Thompson, P, Hawkins, A.R, Gonzalez-Bello, C, van Raaij, M.J.
登録日2022-09-13
公開日2023-02-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Quinate-based ligands for irreversible inactivation of the bacterial virulence factor DHQ1 enzyme-A molecular insight.
Front Mol Biosci, 10, 2023

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件を2024-07-31に公開中

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