Legacy flatfile-incompatible PDB entries

8SUW	E. coli SIR2-HerA complex (dodecamer SIR2 bound 4 protomers of HerA) Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside triphosphate hydrolase, ... Authors: Shen, Z.F, Lin, Q.P, Fu, T.M. Deposit date: 2023-05-13 Release date: 2024-03-27 Method: ELECTRON MICROSCOPY (3.15 Å) Cite: Assembly-mediated activation of the SIR2-HerA supramolecular complex for anti-phage defense. Mol.Cell, 83, 2023
8SW3	BG505 GT1.1 SOSIP in complex with NHP Fabs 12C11 and RM20A3 Descriptor: 12C11 heavy chain variable region, 12C11 light chain variable region, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Zhang, S, Torres, J.L, Ozorowski, G, Ward, A.B. Deposit date: 2023-05-17 Release date: 2024-09-11 Last modified: 2024-10-09 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Germline-targeting HIV vaccination induces neutralizing antibodies to the CD4 binding site. Sci Immunol, 9, 2024
8SW4	BG505 GT1.1 SOSIP in complex with NHP Fabs 21N13, 21M20 and RM20A3 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 21M20 heavy chain variable region, ... Authors: Ozorowski, G, Torres, J.L, Zhang, S, Ward, A.B. Deposit date: 2023-05-17 Release date: 2024-05-29 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (2.85 Å) Cite: Germline-targeting HIV vaccination induces neutralizing antibodies to the CD4 binding site. Sci Immunol, 9, 2024
8SW7	BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody FP1 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 Boost 2 gp120, BG505 Boost 2 gp41, ... Authors: Pratap, P.P, Antansijevic, A, Ozorowski, G, Ward, A.B. Deposit date: 2023-05-17 Release date: 2023-07-26 Last modified: 2024-11-13 Method: ELECTRON MICROSCOPY (3.73 Å) Cite: Focusing antibody responses to the fusion peptide in rhesus macaques. Biorxiv, 2023
8SW8	Crystal Structure of HaloTag7 bound to JF669-HaloTag ligand Descriptor: 1-[(4aM,10P)-7-(azetidin-1-yl)-10-[2-carboxy-3,4,6-trifluoro-5-({2-[2-(hexyloxy)ethoxy]ethyl}carbamoyl)phenyl]-5,5-dimethyldibenzo[b,e]silin-3(5H)-ylidene]azetidin-1-ium, CHLORIDE ION, Haloalkane dehalogenase Authors: Farrants, H, Schreiter, E.R. Deposit date: 2023-05-17 Release date: 2024-06-05 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (1.9 Å) Cite: A modular chemigenetic calcium indicator for multiplexed in vivo functional imaging. Nat.Methods, 21, 2024
8SWW	BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody IF3 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NHP polyclonal antibody IF3 Heavy Chain, ... Authors: Pratap, P.P, Antansijevic, A, Ward, A.B. Deposit date: 2023-05-19 Release date: 2024-05-22 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Priming antibody responses to the fusion peptide in rhesus macaques. Npj Vaccines, 9, 2024
8SWX	BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody Base4 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Base4 Heavy Chain, ... Authors: Pratap, P.P, Antansijevic, A, Ward, A.B. Deposit date: 2023-05-19 Release date: 2024-05-22 Last modified: 2024-10-30 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Priming antibody responses to the fusion peptide in rhesus macaques. Npj Vaccines, 9, 2024
8SXJ	CH505 Disulfide Stapled SOSIP Bound to CH235.12 Fab Descriptor: CH235.12 Heavy Chain, CH235.12 Light Chain, Envelope glycoprotein gp160, ... Authors: Henderson, R. Deposit date: 2023-05-22 Release date: 2024-02-14 Last modified: 2024-10-09 Method: ELECTRON MICROSCOPY (4 Å) Cite: Microsecond dynamics control the HIV-1 Envelope conformation. Sci Adv, 10, 2024
8SXZ	Cryo-EM of the GDP-bound human dynamin polymer assembled on the membrane in the super constricted state Descriptor: Dynamin-1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION Authors: Jimah, J.R, Canagarajah, B.J, Hinshaw, J.E. Deposit date: 2023-05-24 Release date: 2024-05-01 Last modified: 2024-08-07 Method: ELECTRON MICROSCOPY (3.26 Å) Cite: Cryo-EM structures of membrane-bound dynamin in a post-hydrolysis state primed for membrane fission. Dev.Cell, 59, 2024
8SYL	Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs Descriptor: (2S)-N-[(1R,2S,3S,4R,5S)-4-[(2R,3R,4S,5S,6R)-6-(aminomethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5-azanyl-2-[(2S,3R,4S,5S ,6R)-4-azanyl-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]-4-azanyl-2-oxidanyl-butanamide, 16S Ribosomal RNA, 23S Ribosomal RNA, ... Authors: Seely, S.M, Gagnon, M.G. Deposit date: 2023-05-25 Release date: 2023-08-09 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome. Nat Commun, 14, 2023
8SZ4	Cryo-EM of the GDP-bound human dynamin polymer assembled on the membrane in the super constricted state showing the PH domain Descriptor: Dynamin-1 Authors: Jimah, J.R, Canagarajah, B.J, Hinshaw, J.E. Deposit date: 2023-05-26 Release date: 2024-05-01 Last modified: 2024-08-07 Method: ELECTRON MICROSCOPY (2.86 Å) Cite: Cryo-EM structures of membrane-bound dynamin in a post-hydrolysis state primed for membrane fission. Dev.Cell, 59, 2024
8SZ7	Cryo-EM of the GDP-bound human dynamin polymer assembled on the membrane in the super constricted state showing the second PH domain Descriptor: Dynamin-1 Authors: Jimah, J.R, Canagarajah, B.J, Hinshaw, J.E. Deposit date: 2023-05-27 Release date: 2024-05-01 Last modified: 2024-08-07 Method: ELECTRON MICROSCOPY (2.84 Å) Cite: Cryo-EM structures of membrane-bound dynamin in a post-hydrolysis state primed for membrane fission. Dev.Cell, 59, 2024
8SZ8	Cryo-EM of the GDP-bound human dynamin polymer assembled on the membrane in the super constricted state (full helix) Descriptor: Dynamin-1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION Authors: Jimah, J.R, Canagarajah, B.J, Hinshaw, J.E. Deposit date: 2023-05-27 Release date: 2024-05-01 Last modified: 2024-08-07 Method: ELECTRON MICROSCOPY (3.55 Å) Cite: Cryo-EM structures of membrane-bound dynamin in a post-hydrolysis state primed for membrane fission. Dev.Cell, 59, 2024
8T0K	Cryo-EM of the GDP-bound human dynamin (full-length) polymer assembled on the membrane in the super constricted state Descriptor: Dynamin-1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION Authors: Jimah, J.R, Canagarajah, B.J, Hinshaw, J.E. Deposit date: 2023-06-01 Release date: 2024-05-01 Last modified: 2024-08-07 Method: ELECTRON MICROSCOPY (3.58 Å) Cite: Cryo-EM structures of membrane-bound dynamin in a post-hydrolysis state primed for membrane fission. Dev.Cell, 59, 2024
8T0R	Cryo-EM of the GDP-bound human dynamin (full-length) polymer assembled on the membrane in the super constricted state (full helix) Descriptor: Dynamin-1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION Authors: Jimah, J.R, Canagarajah, B.J, Hinshaw, J.E. Deposit date: 2023-06-01 Release date: 2024-05-01 Last modified: 2024-08-07 Method: ELECTRON MICROSCOPY (3.97 Å) Cite: Cryo-EM structures of membrane-bound dynamin in a post-hydrolysis state primed for membrane fission. Dev.Cell, 59, 2024
8T21	Cryo-EM structure of mink variant Y453F trimeric spike protein Descriptor: Spike glycoprotein Authors: Ahn, H.M, Calderon, B, Fan, X, Gao, Y, Horgan, N, Zhou, B, Liang, B. Deposit date: 2023-06-05 Release date: 2023-10-25 Last modified: 2024-10-30 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structural basis of the American mink ACE2 binding by Y453F trimeric spike glycoproteins of SARS-CoV-2. J Med Virol, 95, 2023
8T22	Cryo-EM structure of mink variant Y453F trimeric spike protein bound to one mink ACE2 receptors at downRBD conformation Descriptor: Angiotensin-converting enzyme, Spike glycoprotein Authors: Ahn, H.M, Calderon, B, Fan, X, Gao, Y, Horgan, N, Zhou, B, Liang, B. Deposit date: 2023-06-05 Release date: 2023-10-25 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.83 Å) Cite: Structural basis of the American mink ACE2 binding by Y453F trimeric spike glycoproteins of SARS-CoV-2. J Med Virol, 95, 2023
8T2E	BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody FP3 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FP3 Heavy Chain, ... Authors: Pratap, P.P, Antansijevic, A, Ozorowski, G, Ward, A.B. Deposit date: 2023-06-05 Release date: 2024-06-12 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Priming antibody responses to the fusion peptide in rhesus macaques. Npj Vaccines, 9, 2024
8T2F	BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody N289 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, N289 Heavy Chain, ... Authors: Pratap, P.P, Antansijevic, A, Ozorowski, G, Ward, A.B. Deposit date: 2023-06-05 Release date: 2024-06-12 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Priming antibody responses to the fusion peptide in rhesus macaques. Npj Vaccines, 9, 2024
8T49	MD65 N332-GT5 SOSIP in complex with RM_N332_03 Fab and RM20A3 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MD65 N332-GT5 SOSIP gp120, ... Authors: Ozorowski, G, Torres, J.L, Ward, A.B. Deposit date: 2023-06-08 Release date: 2024-05-08 Last modified: 2024-11-13 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates. Science, 384, 2024
8T4B	MD65 N332-GT5 SOSIP in complex with RM_N332_32 Fab and RM20A3 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, MD65 N332-GT5 SOSIP gp120, MD65 N332-GT5 SOSIP gp41, ... Authors: Ozorowski, G, Torres, J.L, Ward, A.B. Deposit date: 2023-06-08 Release date: 2024-05-08 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates. Science, 384, 2024
8T4D	MD65 N332-GT5 SOSIP in complex with RM_N332_08 Fab and RM20A3 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MD65 N332-GT5 SOSIP gp120, ... Authors: Ozorowski, G, Torres, J.L, Ward, A.B. Deposit date: 2023-06-09 Release date: 2024-05-08 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates. Science, 384, 2024
8T4K	MD64 N332-GT5 SOSIP Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MD64 N332-GT5 SOSIP gp120, ... Authors: Ozorowski, G, Torres, J.L, Ward, A.B. Deposit date: 2023-06-09 Release date: 2024-05-08 Last modified: 2024-10-30 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates. Science, 384, 2024
8T4L	MD65 N332-GT5 SOSIP in complex with RM_N332_07 Fab and RM20A3 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MD65 N332-GT5 SOSIP gp120, ... Authors: Ozorowski, G, Torres, J.L, Ward, A.B. Deposit date: 2023-06-09 Release date: 2024-05-08 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates. Science, 384, 2024
8T5D	Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation Descriptor: 16s RNA, 23S RNA, 30S ribosomal protein S10, ... Authors: Bhattacharjee, S, Gottesman, M.E, Frank, J. Deposit date: 2023-06-13 Release date: 2024-08-28 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: How Dedicated Ribosomes Translate a Leaderless mRNA. J.Mol.Biol., 436, 2024

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