Legacy flatfile-incompatible PDB entries

7SSD	Mid translocation intermediate with EF-G bound with GDP (Structure IV) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2021-11-10 Release date: 2022-02-23 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7SSH	Single chain trimer HLA-A*02:01 (Y108A) with HPV.16 E7 peptide YMLDLQPETTDLYC Descriptor: Protein E7 peptide,Beta-2-microglobulin,MHC class I antigen chimera, VHH Authors: Finton, K.A.K, Rupert, P.B. Deposit date: 2021-11-11 Release date: 2022-11-23 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2.73 Å) Cite: Effects of HLA single chain trimer design on peptide presentation and stability. Front Immunol, 14, 2023
7SSL	Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2021-11-11 Release date: 2022-02-23 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7SSN	Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2021-11-11 Release date: 2022-02-23 Last modified: 2024-11-13 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7SSO	Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2021-11-11 Release date: 2022-02-23 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7SSW	Late translocation intermediate with EF-G dissociated (Structure VI) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2021-11-11 Release date: 2022-02-23 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7ST2	Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2021-11-11 Release date: 2022-02-23 Last modified: 2024-10-09 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7ST3	Consequences of HLA single chain trimer mutations on peptide presentation and binding affinity Descriptor: Protein E7 peptide,Beta-2-microglobulin,MHC class I antigen chimera, VHH Authors: Finton, K.A.K, Rupert, P.B. Deposit date: 2021-11-11 Release date: 2022-11-23 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.78 Å) Cite: Effects of HLA single chain trimer design on peptide presentation and stability. Front Immunol, 14, 2023
7ST6	Pre translocation, non-rotated 70S ribosome (Structure I) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2021-11-12 Release date: 2022-02-23 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3 Å) Cite: Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7ST7	Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2021-11-12 Release date: 2022-02-23 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7STG	Consequences of HLA single chain trimer mutations on peptide presentation and binding affinity Descriptor: RPA-related protein RADX peptide,Beta-2-microglobulin,MHC class I antigen chimera, VHH Authors: Finton, K.A.K, Rupert, P.B. Deposit date: 2021-11-12 Release date: 2022-11-23 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Effects of HLA single chain trimer design on peptide presentation and stability. Front Immunol, 14, 2023
7SU4	Dihydroneopterin aldolase (DHNA) Tyr53Phe from Yersinia pestis co-crystallized with 7,8-dihydroneopterin Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-AMINO-7,8-DIHYDRO-6-(1,2,3-TRIHYDROXYPROPYL)-4(1H)-PTERIDINONE, 7,8-dihydroneopterin aldolase, ... Authors: Bourne, C.R. Deposit date: 2021-11-16 Release date: 2022-12-28 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Dihydroneopterin aldolase (DHNA) Tyr53Phe from Yersinia pestis co-crystallized with 7,8-dihydroneopterin To Be Published
7SU7	Dihydroneopterin aldolase (DHNA) from Yersinia pestis co-crystallized with product Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE, ... Authors: Bourne, C.R. Deposit date: 2021-11-16 Release date: 2022-12-28 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Dihydroneopterin aldolase (DHNA) from Yersinia pestis co-crystallized with product To Be Published
7SUK	Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells Descriptor: 18S pre-rRNA, 40S ribosomal protein S11-A, 40S ribosomal protein S13, ... Authors: Rai, J, Zhao, Y, Li, H. Deposit date: 2021-11-17 Release date: 2022-07-06 Last modified: 2023-08-16 Method: ELECTRON MICROSCOPY (3.99 Å) Cite: Artificial intelligence-assisted cryoEM structure of Bfr2-Lcp5 complex observed in the yeast small subunit processome. Commun Biol, 5, 2022
7SXN	Orb2A residues 1-9 MYNKFVNFI Descriptor: Orb2A residues 1-9 MYNKFVNFI Authors: Bowler, J.T, Sawaya, M.R, Boyer, D.R, Cascio, D, Eisenberg, D.S. Deposit date: 2021-11-23 Release date: 2022-10-05 Last modified: 2024-05-22 Method: ELECTRON CRYSTALLOGRAPHY (1.05 Å) Cite: Micro-electron diffraction structure of the aggregation-driving N terminus of Drosophila neuronal protein Orb2A reveals amyloid-like beta-sheets. J.Biol.Chem., 298, 2022
7SXR	Cryo-EM structure of the SARS-CoV-2 D614G mutant spike protein ectodomain Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. Deposit date: 2021-11-24 Release date: 2021-12-29 Last modified: 2024-11-20 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
7SXX	Cryo-EM structure of the SARS-CoV-2 D614G mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... Authors: Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. Deposit date: 2021-11-24 Release date: 2021-12-29 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (2.66 Å) Cite: Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
7SXZ	Cryo-EM structure of the SARS-CoV-2 D614G,L452R mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... Authors: Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. Deposit date: 2021-11-24 Release date: 2021-12-29 Last modified: 2024-11-20 Method: ELECTRON MICROSCOPY (2.61 Å) Cite: Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
7SY1	Cryo-EM structure of the SARS-CoV-2 D614G,N501Y mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... Authors: Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. Deposit date: 2021-11-24 Release date: 2021-12-29 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
7SY7	Cryo-EM structure of the SARS-CoV-2 D614G,N501Y,E484K,K417T mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... Authors: Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. Deposit date: 2021-11-24 Release date: 2021-12-29 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (2.81 Å) Cite: Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
7T0W	Complex of GABA-A synaptic receptor with autoimmune antibody Fab115 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab115 Heavy Chain, IgG1, ... Authors: Noviello, C.M, Hibbs, R.E, Kreye, J, Teng, J, Pruss, H. Deposit date: 2021-11-30 Release date: 2022-07-13 Last modified: 2025-06-04 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural mechanisms of GABA A receptor autoimmune encephalitis. Cell, 185, 2022
7T0Z	Complex of GABA-A synaptic receptor with autoimmune antibody Fab175 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab175 IgG1 heavy chain, ... Authors: Noviello, C.M, Hibbs, R.E, Kreye, J, Teng, J, Pruss, H. Deposit date: 2021-11-30 Release date: 2022-07-13 Last modified: 2025-05-21 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural mechanisms of GABA A receptor autoimmune encephalitis. Cell, 185, 2022
7T1W	Crystal structure of human Fab A194-01 in complex with its synthetic tetrasaccharide Ara4 epitope (BSI110886) Descriptor: 1,2-ETHANEDIOL, CITRIC ACID, Fab A194-01 heavy chain, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2021-12-02 Release date: 2022-12-07 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Crystal structure of human Fab A194-01 in complex with its synthetic tetrasaccharide Ara4 epitope (BSI110886) to be published
7T1X	Crystal structure of human Fab A194-01 in complex with its synthetic heptasaccharide Ara6-Man epitope (BSI110888) Descriptor: 1,2-ETHANEDIOL, Fab A194-01 heavy chain, Fab A194-01 light chain, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2021-12-02 Release date: 2022-12-07 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structure of human Fab A194-01 in complex with its synthetic heptasaccharide Ara6-Man epitope (BSI110888) to be published
7T3P	IP3 and ATP bound type 3 IP3 receptor in the pre-active A state Descriptor: ADENOSINE-5'-TRIPHOSPHATE, D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE, Inositol 1,4,5-trisphosphate receptor type 3, ... Authors: Schmitz, E.A, Takahashi, H, Karakas, E. Deposit date: 2021-12-08 Release date: 2022-03-23 Last modified: 2024-11-20 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural basis for activation and gating of IP 3 receptors. Nat Commun, 13, 2022

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