신종 코로나바이러스 특집 콘텐츠

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코로나 바이러스, 2020. David S. Goodsell @ RCSB PDB에 의한 오리지널 일러스트를 수정

신종 코로나바이러스 감염증 (Novel Coronavirus disease 2019:COVID-19)의 확산이 세계적으로 매우 큰 문제가 되고 있습니다. 시급히 새로운 바이러스（Severe Acute Respiratory Syndrome Coronavirus 2: SARS-CoV-2）를 이해하고 효과적인 약을 개발하기 위해, 신속하게 구조 생물학 연구가 시작되고 있습니다. PDBj는 사용자의 편의를 도모하기 위해 신종 코로나바이러스의 특집 페이지를 제공하고 있습니다. 매주 수요일에 최신 항목이 추가됩니다.

바이러스 단백질에 관한 해설기사는 아래의 「이달의 분자」 페이지를 참조하십시오.

「전체 엔트리」 탭에는, 모든 PDB ID가 포함되어 있습니다. 이용자가 전체의 독립된 엔트리를 검색하고 싶을 때 사용하실 수 있으며, 동일 저자에 의한 그룹등록의 엔트리도 전부 구별되어 있습니다. 「대표구조」 탭에는, 분해능이 가장 높은 대표구조만을 표지하고 있습니다. 아미노산 서열이 100 % 일치하는 PDB 엔트리의 경우, 다른 리간드를 포함하여도 대표구조에는 제외됩니다. 「최신 엔트리」 탭은, 이번주 공개된 가장 최근의 엔트리 입니다.

Created: 2020-09-03 (last edited: more than 1 year ago)

전체 엔트리 (4459)대표구조 (1984)최신 엔트리 (16)

5SLY

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z1526504764
Descriptor:	1-(1-ethyl-1H-pyrazol-5-yl)-N-methylmethanamine, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.018 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SLZ

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2072621991
Descriptor:	2-(difluoromethoxy)-1-[(3aR,6aS)-hexahydrocyclopenta[c]pyrrol-2(1H)-yl]ethan-1-one, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.54 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM0

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z32665176
Descriptor:	(1-benzofuran-2-yl)(4-methylpiperidin-1-yl)methanone, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.086 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM1

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z68277692
Descriptor:	N-methyl-N-[2-(pyridin-2-yl)ethyl]benzamide, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.941 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM2

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z3006151474
Descriptor:	(5S)-5-(difluoromethoxy)pyridin-2(5H)-one, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.781 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM3

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z943693514
Descriptor:	PHOSPHATE ION, Proofreading exoribonuclease nsp14, ZINC ION, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.198 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM4

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2856434944
Descriptor:	PHOSPHATE ION, Proofreading exoribonuclease nsp14, ZINC ION, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.16 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM5

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2856434807
Descriptor:	2-[4-(2-methoxyphenyl)piperazin-1-yl]ethanenitrile, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.95 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM6

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z1899842917
Descriptor:	3-[(3,5-dimethyl-1,2-oxazol-4-yl)methyl]-5-methyl-1,3,4-thiadiazol-2(3H)-one, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.29 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM7

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z1247413608
Descriptor:	1-(methanesulfonyl)piperidin-4-ol, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.95 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM8

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2027158783
Descriptor:	N-(2,1,3-benzoxadiazol-4-yl)acetamide, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.95 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM9

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2234920345
Descriptor:	N-(2-methoxy-5-methylphenyl)-N'-4H-1,2,4-triazol-4-ylurea, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.01 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SMA

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2856434890
Descriptor:	4-methyl-N-phenylpiperazine-1-carboxamide, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.011 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SMB

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z419995480
Descriptor:	1-(morpholin-4-yl)-4-phenylbutan-1-one, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.181 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SMC

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2033637875
Descriptor:	N~2~-(4-cyano-3-methyl-1,2-thiazol-5-yl)-N~2~-methylglycinamide, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.19 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SMD

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z274575916
Descriptor:	2,4-dimethyl-6-(piperazin-1-yl)pyrimidine, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.826 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SME

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z437584380
Descriptor:	(4-chlorophenyl)(thiomorpholin-4-yl)methanone, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.91 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SMF

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z56791867
Descriptor:	N,N-diethyl-5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-7-amine, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.011 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SMG

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2092370954
Descriptor:	3-amino-N-ethyl-N-methylbenzamide, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.87 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SMH

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2856434938
Descriptor:	1-(5-methoxy-1H-indol-3-yl)-N,N-dimethyl-methanamine, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.64 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SMI

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z71580604
Descriptor:	(2S)-N-(5-methylpyridin-2-yl)oxolane-2-carboxamide, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.08 Å)
Cite:	PanDDA analysis group deposition To Be Published

7MW2

Structure of the SARS-CoV-2 Spike trimer with all RBDs down in complex with the Fab fragment of human neutralizing antibody clone 6
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab of antibody clone 6, ...
Authors:	Hu, Y, Xiong, Y.
Deposit date:	2021-05-15
Release date:	2022-03-16
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (2.97 Å)
Cite:	Monospecific and bispecific monoclonal SARS-CoV-2 neutralizing antibodies that maintain potency against B.1.617. Nat Commun, 13, 2022

7MW3

Structure of the SARS-CoV-2 Spike trimer with two RBDs down in complex with the Fab fragment of human neutralizing antibody clone 6
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:	Hu, Y, Xiong, Y.
Deposit date:	2021-05-15
Release date:	2022-03-16
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.15 Å)
Cite:	Monospecific and bispecific monoclonal SARS-CoV-2 neutralizing antibodies that maintain potency against B.1.617. Nat Commun, 13, 2022

7MW4

Structure of the SARS-CoV-2 Spike trimer with one RBD down in complex with the Fab fragment of human neutralizing antibody clone 6
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:	Hu, Y, Xiong, Y.
Deposit date:	2021-05-15
Release date:	2022-03-16
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.42 Å)
Cite:	Monospecific and bispecific monoclonal SARS-CoV-2 neutralizing antibodies that maintain potency against B.1.617. Nat Commun, 13, 2022

7MW5

Structure of the SARS-CoV-2 Spike trimer with one RBD down in complex with the Fab fragment of human neutralizing antibody clone 2
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab of antibody clone 2, ...
Authors:	Hu, Y, Xiong, Y.
Deposit date:	2021-05-15
Release date:	2022-03-16
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.42 Å)
Cite:	Monospecific and bispecific monoclonal SARS-CoV-2 neutralizing antibodies that maintain potency against B.1.617. Nat Commun, 13, 2022

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