신종 코로나바이러스 특집 콘텐츠

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코로나 바이러스, 2020. David S. Goodsell @ RCSB PDB에 의한 오리지널 일러스트를 수정

신종 코로나바이러스 감염증 (Novel Coronavirus disease 2019:COVID-19)의 확산이 세계적으로 매우 큰 문제가 되고 있습니다. 시급히 새로운 바이러스（Severe Acute Respiratory Syndrome Coronavirus 2: SARS-CoV-2）를 이해하고 효과적인 약을 개발하기 위해, 신속하게 구조 생물학 연구가 시작되고 있습니다. PDBj는 사용자의 편의를 도모하기 위해 신종 코로나바이러스의 특집 페이지를 제공하고 있습니다. 매주 수요일에 최신 항목이 추가됩니다.

바이러스 단백질에 관한 해설기사는 아래의 「이달의 분자」 페이지를 참조하십시오.

「전체 엔트리」 탭에는, 모든 PDB ID가 포함되어 있습니다. 이용자가 전체의 독립된 엔트리를 검색하고 싶을 때 사용하실 수 있으며, 동일 저자에 의한 그룹등록의 엔트리도 전부 구별되어 있습니다. 「대표구조」 탭에는, 분해능이 가장 높은 대표구조만을 표지하고 있습니다. 아미노산 서열이 100 % 일치하는 PDB 엔트리의 경우, 다른 리간드를 포함하여도 대표구조에는 제외됩니다. 「최신 엔트리」 탭은, 이번주 공개된 가장 최근의 엔트리 입니다.

Created: 2020-09-03 (last edited: more than 1 year ago)

전체 엔트리 (4406)대표구조 (1944)최신 엔트리 (19)

8V4F

Model and map from local refinement of a CAB-A17 - Omicron Ba.1 spike complex
Descriptor:	CAB-A17 variable heavy-chain, CAB-A17 variable light chain, Spike protein S1
Authors:	Hallberg, B.M, Das, H.
Deposit date:	2023-11-29
Release date:	2024-06-05
Last modified:	2024-07-03
Method:	ELECTRON MICROSCOPY (2.68 Å)
Cite:	Structural basis of broad SARS-CoV-2 cross-neutralization by affinity-matured public antibodies. Cell Rep Med, 5, 2024

8X0X

Crystal structure of JE-5C in complex with SARS-CoV-2 RBD
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of JE-5C Fab, Light chain of JE-5C Fab, ...
Authors:	Mohapatra, A, Chen, X.
Deposit date:	2023-11-06
Release date:	2024-06-05
Last modified:	2024-07-03
Method:	X-RAY DIFFRACTION (3.45 Å)
Cite:	The presence of broadly neutralizing anti-SARS-CoV-2 RBD antibodies elicited by primary series and booster dose of COVID-19 vaccine. Plos Pathog., 20, 2024

8X0Y

Crystal structure of JM-1A in complex with SARS-CoV-2 RBD
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Heavy chain of JM-1A Fab, ...
Authors:	Mohapatra, A, Chen, X.
Deposit date:	2023-11-06
Release date:	2024-06-05
Last modified:	2024-07-03
Method:	X-RAY DIFFRACTION (1.94 Å)
Cite:	The presence of broadly neutralizing anti-SARS-CoV-2 RBD antibodies elicited by primary series and booster dose of COVID-19 vaccine. Plos Pathog., 20, 2024

8YRO

SARS-CoV-2 Delta Spike in complex with JL-8C
Descriptor:	JL-8C Heavy Chain, JL-8C Light Chain, Spike glycoprotein
Authors:	Nguyen, V.H.T, Chen, X.
Deposit date:	2024-03-21
Release date:	2024-06-05
Last modified:	2024-06-26
Method:	ELECTRON MICROSCOPY (3.27 Å)
Cite:	The presence of broadly neutralizing anti-SARS-CoV-2 RBD antibodies elicited by primary series and booster dose of COVID-19 vaccine. Plos Pathog., 20, 2024

8YRP

SARS-CoV-2 Delta Spike in complex with JM-1A
Descriptor:	JM-1A Heavy Chain, JM-1A Light Chain, Spike glycoprotein
Authors:	Nguyen, V.H.T, Chen, X.
Deposit date:	2024-03-21
Release date:	2024-06-05
Last modified:	2024-06-26
Method:	ELECTRON MICROSCOPY (3.64 Å)
Cite:	The presence of broadly neutralizing anti-SARS-CoV-2 RBD antibodies elicited by primary series and booster dose of COVID-19 vaccine. Plos Pathog., 20, 2024

8YZ5

SARS-CoV-2 Delta Spike in complex with Fab of JE-5C
Descriptor:	Fab heavy chain of JE-5C, Fab light chain of JE-5C, Spike glycoprotein
Authors:	Chen, X, Wu, Y.-M.
Deposit date:	2024-04-06
Release date:	2024-06-05
Last modified:	2024-06-26
Method:	ELECTRON MICROSCOPY (3.93 Å)
Cite:	The presence of broadly neutralizing anti-SARS-CoV-2 RBD antibodies elicited by primary series and booster dose of COVID-19 vaccine. Plos Pathog., 20, 2024

8YZ6

SARS-CoV-2 Spike (BA.1) in complex with Fab of JH-8B
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab heavy chain of JH-8B, ...
Authors:	Chen, X, Wu, Y.-M.
Deposit date:	2024-04-06
Release date:	2024-06-05
Last modified:	2024-06-26
Method:	ELECTRON MICROSCOPY (4.55 Å)
Cite:	The presence of broadly neutralizing anti-SARS-CoV-2 RBD antibodies elicited by primary series and booster dose of COVID-19 vaccine. Plos Pathog., 20, 2024

9FGR

SARS-CoV-2 (wuhan variant) Spike protein in complex with the single chain fragment scFv76-77 (focused refinement)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, scFv76-77 single chain fragment
Authors:	Berlinguer, M, Chaves-Sanjuan, A, Milazzo, F.M, Minenkova, O, De Santis, R, Bolognesi, M.
Deposit date:	2024-05-25
Release date:	2024-06-05
Method:	ELECTRON MICROSCOPY (4 Å)
Cite:	Structure of scFv76-77 in complex with SARS-CoV-2 Spike protein To Be Published

8JMM

Structure of XBB spike protein (S) dimer-trimer in complex with bispecific antibody G7-Fc at 3.75 Angstroms resolution.
Descriptor:	7F3 Fv, GW01 Fv, Spike glycoprotein
Authors:	Hao, A, Mao, Q, Chen, Z, Huang, J, Sun, L.
Deposit date:	2023-06-05
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.75 Å)
Cite:	Structure of XBB spike protein (S) dimer-trimer in complex with bispecific antibody G7-Fc at 3.75 Angstroms resolution. To Be Published

8JYS

SARS-CoV-2 Spike RBD (dimer) in complex with two 2S-1244 nanobodies
Descriptor:	IBT-CoV144 nanobody, Spike protein S1
Authors:	Yang, Y, Zhang, C.H.
Deposit date:	2023-07-03
Release date:	2024-06-12
Last modified:	2024-07-10
Method:	ELECTRON MICROSCOPY (4.5 Å)
Cite:	A novel nanobody broadly neutralizes SARS-CoV-2 via induction of spike trimer dimers conformation. Exploration (Beijing), 4, 2024

8UIR

SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer consensus (S-GSAS-Omicron-XBB.1.16)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-10-10
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.2 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer consensus (S-GSAS-Omicron-XBB.1.16) To Be Published

8UK1

SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer consensus (S-RRAR-Omicron-XBB.1.16)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-10-11
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer consensus (S-RRAR-Omicron-XBB.1.16) To Be Published

8V0L

SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer 1 (S-RRAR-Omicron-XBB.1.16)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer 1 (S-RRAR-Omicron-XBB.1.16) To Be Published

8V0M

SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer 2 (S-RRAR-Omicron-XBB.1.16)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.2 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer 2 (S-RRAR-Omicron-XBB.1.16) To Be Published

8V0N

SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer 3 (S-RRAR-Omicron-XBB.1.16)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.4 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer 3 (S-RRAR-Omicron-XBB.1.16) To Be Published

8V0O

SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-XBB.1.16)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.3 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-XBB.1.16) To Be Published

8V0P

SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-XBB.1.16)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.3 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-XBB.1.16) To Be Published

8V0Q

SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-XBB.1.16)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.9 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-XBB.1.16) To Be Published

8V0R

SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-XBB.1.5)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-XBB.1.5) To Be Published

8V0S

SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-XBB.1.5)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.3 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-XBB.1.5) To Be Published

8V0T

SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-XBB.1.5)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.1 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-XBB.1.5) To Be Published

8V0U

SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 4 (S-GSAS-Omicron-XBB.1.5)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.3 Å)
Cite:	SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 4 (S-GSAS-Omicron-XBB.1.5) To Be Published

8V0V

SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-EG.5)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.1 Å)
Cite:	SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-EG.5) To Be Published

8V0W

SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-EG.5)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.3 Å)
Cite:	SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-EG.5) To Be Published

8V0X

SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-EG.5)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhang, Q.E, Acharya, P.
Deposit date:	2023-11-17
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.3 Å)
Cite:	SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-EG.5) To Be Published

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