Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

新型コロナウイルスの構造情報

このページの他言語版もあります: English简体中文繁體中文한국어
コロナウイルス
コロナウイルス, 2020. David S. Goodsell@RCSB PDB による原画を修正

最近、新型コロナウイルス感染症(Novel Coronavirus disease 2019: COVID-19)の拡大が世界中で深刻な問題となっています。早急にこの新型ウイルス(Severe Acute Respiratory Syndrome Coronavirus 2: SARS-CoV-2)を理解し有効な薬を開発するため,関連するタンパク質の構造研究は既に始まっています。そして,解明された構造はPDBに登録されていっています。PDBjでは利用者の利便を図るため,新型コロナウイルス特集ページを作成しました。新たなエントリーが毎週水曜日の週次更新で公開されると、同時にこのページにも追加されます。

またこのウイルスのタンパク質に関する解説記事を以下の「今月の分子」ページに掲載しています。

「全エントリー」のタブでは,同じ著者によるグループ登録のエントリーも全て区別し,すべてのPDB IDを省略せず表示しています。 「代表構造」タブには最も分解能の高い代表構造のみを表示しており,アミノ酸配列が100%同じPDBエントリーはリガンドが異なるものも含め除外してあります。 「最新のエントリー」のタブは,今週公開された最も新しいエントリーです。


作成日: 2020-09-03 (最終更新日: more than 1 year ago)2022-09-02
9LUG
DownloadVisualize
BU of 9lug by Molmil
Crystal structure of SARS-Cov-2 main protease E166V mutant in complex with Bofutrelvir
分子名称: ORF1a polyprotein, ~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide
著者Zhou, X.L, Li, J.
登録日2025-02-08
公開日2025-04-09
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献Inhibitory efficacy and structural insights of Bofutrelvir against SARS-CoV-2 M pro mutants and MERS-CoV M pro.
Commun Biol, 8, 2025
9B4X
DownloadVisualize
BU of 9b4x by Molmil
SARS CoV-2 full-length spike protein with Lys1269Ala and His1271Ala substitutions in the coatomer binding motif, 1RBD-up conformation (SPIKE-AXA)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Singh, S, Hasan, S.S.
登録日2024-03-21
公開日2025-04-16
実験手法ELECTRON MICROSCOPY (3.33 Å)
主引用文献Cryo-EM structure of SARS CoV-2 full-length spike with Lys1269Ala and His1271Ala substitutions in the coatomer binding motif, 1RBD-up conformation
To Be Published
9B8F
DownloadVisualize
BU of 9b8f by Molmil
SARS CoV-2 full-length spike protein with Lys1269Ala and His1271Ala substitutions in the coatomer binding motif, 2RBD-up conformation (SPIKE-AXA)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Singh, S, Hasan, S.S.
登録日2024-03-29
公開日2025-04-16
実験手法ELECTRON MICROSCOPY (4.15 Å)
主引用文献Structure of SARS CoV-2 full-length spike protein with Lys1269Ala and His1271Ala substitutions in the coatomer binding motif, 2RBD-up conformation
To Be Published
9B9U
DownloadVisualize
BU of 9b9u by Molmil
SARS-CoV-2 full-length spike protein with His1271Lys substitution in the coatomer binding motif, 1RBD-up conformation (SPIKE-KXK)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Singh, S, Hasan, S.S.
登録日2024-04-03
公開日2025-04-16
実験手法ELECTRON MICROSCOPY (2.86 Å)
主引用文献SARS CoV-2 full-length spike protein with His1271Lys substitution in the coatomer binding motif, 1RBD-up conformation
To Be Published
9BBK
DownloadVisualize
BU of 9bbk by Molmil
SARS-CoV-2 full-length spike protein with His1271Lys substitution in the coatomer binding motif, 2RBD-up conformation (SPIKE-KxK)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Singh, S, Hasan, S.S.
登録日2024-04-06
公開日2025-04-16
実験手法ELECTRON MICROSCOPY (2.95 Å)
主引用文献Structure of SARS CoV-2 full-length spike protein with His1271Lys substitution in the coatomer binding motif, 2RBD-up conformation
To Be Published
9BBP
DownloadVisualize
BU of 9bbp by Molmil
SARS-CoV-2 Mpro in complex with compound 12d inhibitor
分子名称: 3C-like proteinase nsp5, GLYCINE, N-{(2R)-1-amino-3-[(2R,3S)-2-hydroxypyrrolidin-3-yl]propan-2-yl}-N~2~-[4-(6-fluoropyridin-3-yl)benzoyl]-L-leucinamide, ...
著者Afsar, M, Bury, P, Olsen, S.K.
登録日2024-04-07
公開日2025-04-16
最終更新日2025-05-14
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献SARS-CoV-2 Mpro in complex with compound 12d inhibitor
To Be Published
9BBQ
DownloadVisualize
BU of 9bbq by Molmil
SARS-CoV-2 Mpro in complex with compound 6c inhibitor
分子名称: 3C-like proteinase nsp5, N-[(2R)-1-({(2S)-1-amino-3-[(2S,3R)-2-hydroxypyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4'-ethoxy[1,1'-biphenyl]-4-carboxamide
著者Afsar, M, Bury, P, Olsen, S.K.
登録日2024-04-07
公開日2025-04-16
最終更新日2025-05-14
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献SARS-CoV-2 Mpro in complex with compound 6c inhibitor
To Be Published
9BBR
DownloadVisualize
BU of 9bbr by Molmil
SARS-CoV-2 Mpro in complex with compound 6b inhibitor
分子名称: 3C-like proteinase nsp5, 4'-fluoro-N-[(2S)-1-({(2R)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl][1,1'-biphenyl]-4-carboxamide
著者Afsar, M, Bury, P, Olsen, S.K.
登録日2024-04-07
公開日2025-04-16
最終更新日2025-05-14
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献SARS-CoV-2 Mpro in complex with compound 6b inhibitor
To Be Published
9BBS
DownloadVisualize
BU of 9bbs by Molmil
SARS-CoV-2 Mpro in complex with compound 6d inhibitor
分子名称: 3C-like proteinase nsp5, N-[(2S)-1-({(2R)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4'-methoxy[1,1'-biphenyl]-4-carboxamide
著者Afsar, M, Bury, P, Olsen, S.K, Nayak, A.
登録日2024-04-07
公開日2025-04-16
最終更新日2025-05-14
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献SARS-CoV-2 Mpro in complex with compound 6d inhibitor
To Be Published
9BBT
DownloadVisualize
BU of 9bbt by Molmil
SARS-CoV-2 Mpro in complex with compound 6f inhibitor
分子名称: 3C-like proteinase nsp5, N-[(2S)-1-({(2R)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-3',4'-dimethoxy[1,1'-biphenyl]-4-carboxamide
著者Afsar, M, Bury, P, Olsen, S.K, Nayak, A.
登録日2024-04-07
公開日2025-04-16
最終更新日2025-05-14
実験手法X-RAY DIFFRACTION (2.57 Å)
主引用文献SARS-CoV-2 Mpro in complex with compound 6f inhibitor
To Be Published
9BBU
DownloadVisualize
BU of 9bbu by Molmil
SARS-CoV-2 Mpro in complex with compound 6h inhibitor
分子名称: 1,2-ETHANEDIOL, 3C-like proteinase nsp5, N~2~-[4-(5-chloropyridin-3-yl)benzoyl]-N-{(1Z,2S)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide
著者Nayak, A, Afsar, M, Nayak, D, Olsen, S.K.
登録日2024-04-07
公開日2025-04-16
最終更新日2025-05-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献SARS-CoV-2 Mpro in complex with compound 6h inhibitor
To Be Published
9BBV
DownloadVisualize
BU of 9bbv by Molmil
SARS-CoV-2 Mpro in complex with compound 6j inhibitor
分子名称: 3C-like proteinase nsp5, N-{(1E,2R)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-[4-(2-methyl-2H-indazol-4-yl)benzoyl]-L-leucinamide
著者Nayak, A, Afsar, M, Nayak, D, Olsen, S.K.
登録日2024-04-07
公開日2025-04-16
最終更新日2025-05-14
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献SARS-CoV-2 Mpro in complex with compound 6j inhibitor
To Be Published
9BBW
DownloadVisualize
BU of 9bbw by Molmil
SARS-CoV-2 Mpro in complex with compound 6k inhibitor
分子名称: 3C-like proteinase nsp5, N-{(2R)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-[4-(6-methoxypyridin-3-yl)benzoyl]-L-leucinamide
著者Afsar, M, Bury, P, Olsen, S.K, Nayak, A.
登録日2024-04-07
公開日2025-04-16
最終更新日2025-05-14
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献SARS-CoV-2 Mpro in complex with compound 6k inhibitor
To Be Published
9BBX
DownloadVisualize
BU of 9bbx by Molmil
SARS-CoV-2 Mpro in complex with compound 6l inhibitor
分子名称: 3C-like proteinase nsp5, N-{(2R)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-[4-(1-methyl-1H-indazol-5-yl)benzoyl]-L-leucinamide
著者Afsar, M, Bury, P, Olsen, S.K, Nayak, A.
登録日2024-04-07
公開日2025-04-16
最終更新日2025-05-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献SARS-CoV-2 Mpro in complex with compound 6l inhibitor
To Be Published
9BBY
DownloadVisualize
BU of 9bby by Molmil
SARS-CoV-2 Mpro in complex with compound 18b inhibitor
分子名称: 3-fluoro-N-[(2S)-1-({(2R)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4'-methoxy[1,1'-biphenyl]-4-carboxamide, 3C-like proteinase nsp5
著者Afsar, M, Bury, P, Olsen, S.K.
登録日2024-04-07
公開日2025-04-16
最終更新日2025-05-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献SARS-CoV-2 Mpro in complex with compound 18b inhibitor
To Be Published
9BBZ
DownloadVisualize
BU of 9bbz by Molmil
SARS-CoV-2 Mpro in complex with compound 18d inhibitor
分子名称: 3C-like proteinase nsp5, N~2~-[(4M)-2-fluoro-4-(1-methyl-1H-indazol-5-yl)benzene-1-carbonyl]-N-{(1E,2S)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide
著者Afsar, M, Bury, P, Olsen, S.K.
登録日2024-04-07
公開日2025-04-16
最終更新日2025-05-14
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献SARS-CoV-2 Mpro in complex with compound 18d inhibitor
To Be Published
9BC0
DownloadVisualize
BU of 9bc0 by Molmil
SARS-CoV-2 Mpro in complex with compound 18r inhibitor
分子名称: 3-chloro-N-[(2R)-1-({(1Z,2S)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4'-methoxy[1,1'-biphenyl]-4-carboxamide, 3C-like proteinase nsp5
著者Afsar, M, Bury, P, Olsen, S.K.
登録日2024-04-07
公開日2025-04-16
最終更新日2025-05-14
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献SARS-CoV-2 Mpro in complex with compound 18r inhibitor
To Be Published
9BD9
DownloadVisualize
BU of 9bd9 by Molmil
SARS CoV-2 full-length WT spike protein, 1RBD-up conformation (SPIKE-WT)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Singh, S, Hasan, S.S.
登録日2024-04-11
公開日2025-04-16
実験手法ELECTRON MICROSCOPY (2.95 Å)
主引用文献Structure of SARS CoV-2 full-length spike protein, 1RBD-up conformation
To Be Published
9BEA
DownloadVisualize
BU of 9bea by Molmil
Structure of SARS-CoV-2 full-length WT spike protein with internal tag, 2RBD-up conformation (SPIKE-WT)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Singh, S, Hasan, S.S.
登録日2024-04-15
公開日2025-04-16
実験手法ELECTRON MICROSCOPY (3.85 Å)
主引用文献Structure of SARS CoV-2 full-length spike protein with internal tag, 2RBD-up conformation
To Be Published
9DHY
DownloadVisualize
BU of 9dhy by Molmil
Structure of SARS-CoV-2 spike in complex with antibody Fab COVIC-154
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody Fab COVIC-154 Heavy Chain, ...
著者Yu, X, Saphire, E.O.
登録日2024-09-04
公開日2025-04-16
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献A global collaboration for systematic analysis of broad-ranging antibodies against the SARS-CoV-2 spike protein.
Cell Rep, 44, 2025
8WTS
DownloadVisualize
BU of 8wts by Molmil
SARS-CoV-2 3CLpro bound to covalent inhibitor
分子名称: (2~{R})-2-[[4-[chloranyl-bis(fluoranyl)methoxy]phenyl]-(2-chloranyl-2-fluoranyl-ethanoyl)amino]-~{N}-(oxan-4-yl)-2-pyrimidin-5-yl-propanamide, 1,2-ETHANEDIOL, 3C-like proteinase, ...
著者Peng, J, Sun, D, Ding, X.
登録日2023-10-19
公開日2025-04-23
最終更新日2025-05-28
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献A novel, covalent broad-spectrum inhibitor targeting human coronavirus M pro.
Nat Commun, 16, 2025
8Z2E
DownloadVisualize
BU of 8z2e by Molmil
Crystal structure of nanobody Tnb04-1 with antibody 1F11 fab and SARS-CoV-2 RBD
分子名称: 1F11-H, 1F11-L, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Wang, X.Q, Zhang, L.Q, Chen, J, Dong, H.D.
登録日2024-04-12
公開日2025-04-23
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of nanobody Tnb04-1 with antibody 1F11 fab and SARS-CoV-2 RBD
To Be Published
9BC1
DownloadVisualize
BU of 9bc1 by Molmil
SARS-CoV-2 Mpro in complex with peptide mimetic inhibitor
分子名称: 3C-like proteinase nsp5, peptide mimetic inhibitor
著者Afsar, M, Priscila, B, Olsen, S.K.
登録日2024-04-07
公開日2025-04-23
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献SARS-CoV-2 Mpro in complex with peptide mimetic inhibitor
To Be Published
9GF7
DownloadVisualize
BU of 9gf7 by Molmil
SARS-CoV2 Main Protease (Mpro) in complex with the covalent inhibitor 28a
分子名称: 3C-like proteinase nsp5, ~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]quinoline-8-carboxamide
著者Lolicato, M, Arrigoni, C.
登録日2024-08-08
公開日2025-04-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Synthesis and biological investigation of peptidomimetic SARS-CoV-2 main protease inhibitors bearing quinoline-based heterocycles at P 3.
Arch Pharm, 358, 2025
9KN1
DownloadVisualize
BU of 9kn1 by Molmil
Crystal structure of SARS-CoV-2 nucleocapsid phosphoprotein N-terminal domain(N-NTD) in complex with UMP
分子名称: Nucleoprotein, PHOSPHATE ION, URIDINE-5'-MONOPHOSPHATE
著者Higashiura, A, Yamamoto, A, Ito, H.
登録日2024-11-18
公開日2025-04-23
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献Structural insights into nucleocapsid protein variability: Implications for PJ34 efficacy against SARS-CoV-2.
Virology, 604, 2025

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon