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Yorodumi- PDB-6gh0: Two-quartet kit* G-quadruplex is formed via double-stranded pre-f... -
+Open data
-Basic information
Entry | Database: PDB / ID: 6gh0 | ||||||||||||||||||||||||||||||||||
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Title | Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure | ||||||||||||||||||||||||||||||||||
Components | DNA (5'-D(*Keywords | DNA / G-quadruplex / two G-quartets / c-KIT promoter | Function / homology | DNA / DNA (> 10) | Function and homology information Biological species | Homo sapiens (human) | Method | SOLUTION NMR / simulated annealing | Authors | Kotar, A. / Rigo, R. / Sissi, C. / Plavec, J. | Funding support | Slovenia, Italy, 3items |
Citation | Journal: Nucleic Acids Res. / Year: 2019 | Title: Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure. Authors: Kotar, A. / Rigo, R. / Sissi, C. / Plavec, J. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6gh0.cif.gz | 144.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6gh0.ent.gz | 115.4 KB | Display | PDB format |
PDBx/mmJSON format | 6gh0.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6gh0_validation.pdf.gz | 318.4 KB | Display | wwPDB validaton report |
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Full document | 6gh0_full_validation.pdf.gz | 374.8 KB | Display | |
Data in XML | 6gh0_validation.xml.gz | 7.2 KB | Display | |
Data in CIF | 6gh0_validation.cif.gz | 11.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/gh/6gh0 ftp://data.pdbj.org/pub/pdb/validation_reports/gh/6gh0 | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 6940.439 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) Homo sapiens (human) |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 6 | ||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 100 / Conformers submitted total number: 10 |