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Open data
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Basic information
Entry | Database: PDB / ID: 2lxq | ||||||||||||||||||||
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Title | Monomeric PilE G-Quadruplex DNA from Neisseria Gonorrhoeae | ||||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / G-TETRAD / ALL-PARALLEL QUADRUPLEX / 5'-END STACKED / PILIN Av | Function / homology | DNA / DNA (> 10) | ![]() Method | SOLUTION NMR / torsion angle dynamics, molecular dynamics, matrix relaxation | Model details | lowest energy, model1 | ![]() Kuryavyi, V.V. / Patel, D.J. | ![]() ![]() Title: RecA-Binding pilE G4 Sequence Essential for Pilin Antigenic Variation Forms Monomeric and 5' End-Stacked Dimeric Parallel G-Quadruplexes. Authors: Kuryavyi, V. / Cahoon, L.A. / Seifert, H.S. / Patel, D.J. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 181.8 KB | Display | ![]() |
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PDB format | ![]() | 153.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 304.4 KB | Display | ![]() |
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Full document | ![]() | 320.8 KB | Display | |
Data in XML | ![]() | 3.4 KB | Display | |
Data in CIF | ![]() | 6.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 6999.496 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 0.105 / pH: 6.8 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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Processing
NMR software | Name: ![]() |
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Refinement | Method: torsion angle dynamics, molecular dynamics, matrix relaxation Software ordinal: 1 |
NMR representative | Selection criteria: lowest energy |
NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 100 / Conformers submitted total number: 12 |