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- PDB-6gh0: Two-quartet kit* G-quadruplex is formed via double-stranded pre-f... -
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Open data
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Basic information
Entry | Database: PDB / ID: 6gh0 | ||||||||||||||||||||||||||||||||||
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Title | Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure | ||||||||||||||||||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / G-quadruplex / two G-quartets / c-KIT promoter | Function / homology | DNA / DNA (> 10) | ![]() Biological species | ![]() Method | SOLUTION NMR / simulated annealing | ![]() Kotar, A. / Rigo, R. / Sissi, C. / Plavec, J. | Funding support | | ![]() ![]()
![]() ![]() Title: Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure. Authors: Kotar, A. / Rigo, R. / Sissi, C. / Plavec, J. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 144.5 KB | Display | ![]() |
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PDB format | ![]() | 115.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 318.4 KB | Display | ![]() |
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Full document | ![]() | 374.8 KB | Display | |
Data in XML | ![]() | 7.2 KB | Display | |
Data in CIF | ![]() | 11.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 6940.439 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 6 | ||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 100 / Conformers submitted total number: 10 |