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- PDB-3ztj: Structure of influenza A neutralizing antibody selected from cult... -

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Basic information

Entry
Database: PDB / ID: 3ztj
TitleStructure of influenza A neutralizing antibody selected from cultures of single human plasma cells in complex with human H3 Influenza haemagglutinin.
Components
  • (FI6V3 ANTIBODY ...) x 2
  • (HEMAGGLUTININ ...) x 2
KeywordsIMMUNE SYSTEM/VIRAL PROTEIN / IMMUNE SYSTEM-VIRAL PROTEIN COMPLEX / X31 / MONOCLONAL ANTIBODY
Function / homology
Function and homology information


viral budding from plasma membrane / clathrin-dependent endocytosis of virus by host cell / host cell surface receptor binding / fusion of virus membrane with host plasma membrane / fusion of virus membrane with host endosome membrane / viral envelope / virion attachment to host cell / host cell plasma membrane / virion membrane / membrane
Similarity search - Function
Hemagglutinin Ectodomain; Chain B - #10 / Hemagglutinin Ectodomain; Chain B / Hemagglutinin (Ha1 Chain); Chain: A; domain 1 / Haemagglutinin, alpha/beta domain, HA1 chain / Haemagglutinin, influenzavirus A / Haemagglutinin, HA1 chain, alpha/beta domain superfamily / Haemagglutinin / Haemagglutinin, influenzavirus A/B / Viral capsid/haemagglutinin protein / Immunoglobulins ...Hemagglutinin Ectodomain; Chain B - #10 / Hemagglutinin Ectodomain; Chain B / Hemagglutinin (Ha1 Chain); Chain: A; domain 1 / Haemagglutinin, alpha/beta domain, HA1 chain / Haemagglutinin, influenzavirus A / Haemagglutinin, HA1 chain, alpha/beta domain superfamily / Haemagglutinin / Haemagglutinin, influenzavirus A/B / Viral capsid/haemagglutinin protein / Immunoglobulins / Alpha-Beta Complex / Immunoglobulin-like / Sandwich / Mainly Beta / Alpha Beta
Similarity search - Domain/homology
Hemagglutinin / Hemagglutinin
Similarity search - Component
Biological speciesHOMO SAPIENS (human)
INFLUENZA A VIRUS
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.41 Å
AuthorsVoss, J.E. / Vachieri, S.G. / Gamblin, S.J. / Collins, P.J. / Haire, L.F. / Skehel, J.J.
CitationJournal: Science / Year: 2011
Title: A Neutralizing Antibody Selected from Plasma Cells that Binds to Group 1 and Group 2 Influenza a Hemagglutinins.
Authors: Corti, D. / Voss, J.E. / Gamblin, S.J. / Codoni, G. / Macagno, A. / Jarrossay, D. / Vachieri, S.G. / Pinna, D. / Minola, A. / Vanzetta, F. / Silacci, C. / Fernandez-Rodriguez, B.M. / Agatic, ...Authors: Corti, D. / Voss, J.E. / Gamblin, S.J. / Codoni, G. / Macagno, A. / Jarrossay, D. / Vachieri, S.G. / Pinna, D. / Minola, A. / Vanzetta, F. / Silacci, C. / Fernandez-Rodriguez, B.M. / Agatic, G. / Bianchi, S. / Giacchetto-Sasselli, I. / Calder, L. / Sallusto, F. / Collins, P.J. / Haire, L.F. / Temperton, N. / Langedijk, J.P.M. / Skehel, J.J. / Lanzavecchia, A.
History
DepositionJul 8, 2011Deposition site: PDBE / Processing site: PDBE
Revision 1.0Aug 10, 2011Provider: repository / Type: Initial release
Revision 1.1Aug 24, 2011Group: Database references / Source and taxonomy
Revision 1.2Sep 5, 2012Group: Derived calculations
Revision 1.3May 29, 2013Group: Other
Revision 1.4Jan 25, 2017Group: Atomic model / Other
Revision 2.0Jul 29, 2020Group: Advisory / Atomic model ...Advisory / Atomic model / Data collection / Derived calculations / Other / Structure summary
Category: atom_site / atom_site_anisotrop ...atom_site / atom_site_anisotrop / chem_comp / database_PDB_caveat / entity / pdbx_branch_scheme / pdbx_chem_comp_identifier / pdbx_database_status / pdbx_entity_branch / pdbx_entity_branch_descriptor / pdbx_entity_branch_link / pdbx_entity_branch_list / pdbx_entity_nonpoly / pdbx_nonpoly_scheme / pdbx_struct_assembly_gen / pdbx_validate_chiral / pdbx_validate_close_contact / struct_asym / struct_conn / struct_site / struct_site_gen
Item: _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ..._atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_asym_id / _atom_site.auth_atom_id / _atom_site.auth_comp_id / _atom_site.auth_seq_id / _atom_site.label_asym_id / _atom_site.label_atom_id / _atom_site.label_comp_id / _atom_site.label_entity_id / _atom_site.type_symbol / _atom_site_anisotrop.U[1][1] / _atom_site_anisotrop.U[1][2] / _atom_site_anisotrop.U[1][3] / _atom_site_anisotrop.U[2][2] / _atom_site_anisotrop.U[2][3] / _atom_site_anisotrop.U[3][3] / _atom_site_anisotrop.pdbx_auth_asym_id / _atom_site_anisotrop.pdbx_auth_atom_id / _atom_site_anisotrop.pdbx_auth_comp_id / _atom_site_anisotrop.pdbx_auth_seq_id / _atom_site_anisotrop.pdbx_label_asym_id / _atom_site_anisotrop.pdbx_label_atom_id / _atom_site_anisotrop.pdbx_label_comp_id / _atom_site_anisotrop.type_symbol / _chem_comp.name / _chem_comp.type / _pdbx_database_status.status_code_sf / _pdbx_struct_assembly_gen.asym_id_list / _pdbx_validate_chiral.auth_asym_id / _pdbx_validate_chiral.auth_seq_id / _pdbx_validate_close_contact.auth_asym_id_2 / _pdbx_validate_close_contact.auth_seq_id_2 / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.pdbx_role / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_comp_id
Description: Carbohydrate remediation / Provider: repository / Type: Remediation

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
A: HEMAGGLUTININ HA1 CHAIN
B: HEMAGGLUTININ HA2 CHAIN
C: HEMAGGLUTININ HA1 CHAIN
D: HEMAGGLUTININ HA2 CHAIN
E: HEMAGGLUTININ HA1 CHAIN
F: HEMAGGLUTININ HA2 CHAIN
G: FI6V3 ANTIBODY HEAVY CHAIN
H: FI6V3 ANTIBODY LIGHT CHAIN
I: FI6V3 ANTIBODY HEAVY CHAIN
J: FI6V3 ANTIBODY LIGHT CHAIN
K: FI6V3 ANTIBODY HEAVY CHAIN
L: FI6V3 ANTIBODY LIGHT CHAIN
hetero molecules


Theoretical massNumber of molelcules
Total (without water)322,10627
Polymers315,29512
Non-polymers6,81115
Water0
1


  • Idetical with deposited unit
  • defined by author&software
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area50590 Å2
ΔGint-114.3 kcal/mol
Surface area94260 Å2
MethodPISA
Unit cell
Length a, b, c (Å)171.488, 193.428, 213.748
Angle α, β, γ (deg.)90.00, 90.00, 90.00
Int Tables number19
Space group name H-MP212121
Noncrystallographic symmetry (NCS)NCS oper:
IDCodeMatrixVector
1given(-0.463, 0.69, -0.557), (-0.875, -0.254, 0.413), (0.143, 0.678, 0.721)1.96038, 104.58604, -46.47054
2given(-0.467, -0.873, 0.145), (0.689, -0.256, 0.678), (-0.555, 0.416, 0.72)98.87587, 56.96461, -8.83538
3given(-0.462, 0.699, -0.546), (-0.873, -0.251, 0.418), (0.155, 0.67, 0.726)0.67192, 104.09324, -46.28536
4given(-0.472, -0.869, 0.149), (0.692, -0.26, 0.673), (-0.546, 0.421, 0.724)98.51775, 57.50359, -9.65878
5given(-0.423, -0.878, 0.225), (0.748, -0.198, 0.634), (-0.512, 0.437, 0.74)95.10723, 51.22371, -12.88908
6given(-0.475, 0.681, -0.557), (-0.864, -0.242, 0.441), (0.166, 0.691, 0.704)2.92544, 102.65349, -48.75092
7given(-0.421, -0.879, 0.222), (0.75, -0.2, 0.631), (-0.51, 0.432, 0.743)95.57594, 51.13067, -12.73187
8given(-0.486, 0.698, -0.526), (-0.853, -0.25, 0.457), (0.188, 0.671, 0.717)1.24344, 101.90778, -48.36013

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Components

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HEMAGGLUTININ ... , 2 types, 6 molecules ACEBDF

#1: Protein HEMAGGLUTININ HA1 CHAIN


Mass: 36222.652 Da / Num. of mol.: 3 / Source method: isolated from a natural source / Source: (natural) INFLUENZA A VIRUS / Strain: A/AICHI/2/1968(H3N2) / References: UniProt: P03437, UniProt: Q91MA7*PLUS
#2: Protein HEMAGGLUTININ HA2 CHAIN


Mass: 20212.350 Da / Num. of mol.: 3 / Fragment: RESIDUES 346-520 / Source method: isolated from a natural source / Source: (natural) INFLUENZA A VIRUS / Strain: A/AICHI/2/1968(H3N2) / References: UniProt: P03437, UniProt: Q91MA7*PLUS

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Antibody , 2 types, 6 molecules GIKHJL

#3: Antibody FI6V3 ANTIBODY HEAVY CHAIN


Mass: 24557.555 Da / Num. of mol.: 3
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) HOMO SAPIENS (human) / Production host: SPODOPTERA FRUGIPERDA (fall armyworm)
#4: Antibody FI6V3 ANTIBODY LIGHT CHAIN


Mass: 24105.758 Da / Num. of mol.: 3
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) HOMO SAPIENS (human) / Production host: SPODOPTERA FRUGIPERDA (fall armyworm)

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Sugars , 3 types, 15 molecules

#5: Polysaccharide
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta- ...beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose


Type: oligosaccharide / Mass: 586.542 Da / Num. of mol.: 4
Source method: isolated from a genetically manipulated source
DescriptorTypeProgram
DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-Glycam Condensed SequenceGMML 1.0
WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1WURCSPDB2Glycan 1.1.0
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}LINUCSPDB-CARE
#6: Polysaccharide
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose


Type: oligosaccharide / Mass: 424.401 Da / Num. of mol.: 10
Source method: isolated from a genetically manipulated source
DescriptorTypeProgram
DGlcpNAcb1-4DGlcpNAcb1-Glycam Condensed SequenceGMML 1.0
WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1WURCSPDB2Glycan 1.1.0
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}LINUCSPDB-CARE
#7: Sugar ChemComp-NAG / 2-acetamido-2-deoxy-beta-D-glucopyranose / N-Acetylglucosamine


Type: D-saccharide, beta linking / Mass: 221.208 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Formula: C8H15NO6
IdentifierTypeProgram
DGlcpNAcbCONDENSED IUPAC CARBOHYDRATE SYMBOLGMML 1.0
N-acetyl-b-D-glucopyranosamineCOMMON NAMEGMML 1.0
b-D-GlcpNAcIUPAC CARBOHYDRATE SYMBOLPDB-CARE 1.0
GlcNAcSNFG CARBOHYDRATE SYMBOLGMML 1.0

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 5.62 Å3/Da / Density % sol: 75 % / Description: NONE

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Data collection

DiffractionMean temperature: 77 K
Diffraction sourceSource: SYNCHROTRON / Site: Diamond / Beamline: I02 / Wavelength: 0.9763
DetectorType: ADSC CCD / Detector: CCD
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.9763 Å / Relative weight: 1
ReflectionResolution: 3.4→143.4 Å / Num. obs: 97028 / % possible obs: 96.1 % / Observed criterion σ(I): 2 / Redundancy: 2.9 % / Rmerge(I) obs: 0.12 / Net I/σ(I): 14
Reflection shellResolution: 3.41→3.55 Å / Redundancy: 2.4 % / Rmerge(I) obs: 0.6 / Mean I/σ(I) obs: 1.6 / % possible all: 93.2

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Processing

Software
NameVersionClassification
REFMAC5.5.0109refinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT / Resolution: 3.41→143.42 Å / Cor.coef. Fo:Fc: 0.923 / Cor.coef. Fo:Fc free: 0.885 / SU B: 55.725 / SU ML: 0.393 / Cross valid method: THROUGHOUT / ESU R: 1.457 / ESU R Free: 0.482 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
RfactorNum. reflection% reflectionSelection details
Rfree0.28434 4640 5 %RANDOM
Rwork0.2341 ---
obs0.23671 88081 95.56 %-
Solvent computationIon probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK
Displacement parametersBiso mean: 152.486 Å2
Baniso -1Baniso -2Baniso -3
1-3.56 Å20 Å20 Å2
2---4.84 Å20 Å2
3---1.28 Å2
Refinement stepCycle: LAST / Resolution: 3.41→143.42 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms19934 0 450 0 20384
Refine LS restraints
Refine-IDTypeDev idealDev ideal targetNumber
X-RAY DIFFRACTIONr_bond_refined_d0.0160.02220898
X-RAY DIFFRACTIONr_bond_other_d0.0010.0213686
X-RAY DIFFRACTIONr_angle_refined_deg1.6991.96328491
X-RAY DIFFRACTIONr_angle_other_deg0.971333266
X-RAY DIFFRACTIONr_dihedral_angle_1_deg8.23652573
X-RAY DIFFRACTIONr_dihedral_angle_2_deg37.58524.401927
X-RAY DIFFRACTIONr_dihedral_angle_3_deg20.412153200
X-RAY DIFFRACTIONr_dihedral_angle_4_deg17.27815107
X-RAY DIFFRACTIONr_chiral_restr0.0890.23224
X-RAY DIFFRACTIONr_gen_planes_refined0.0070.02123292
X-RAY DIFFRACTIONr_gen_planes_other0.0010.024188
X-RAY DIFFRACTIONr_nbd_refined
X-RAY DIFFRACTIONr_nbd_other
X-RAY DIFFRACTIONr_nbtor_refined
X-RAY DIFFRACTIONr_nbtor_other
X-RAY DIFFRACTIONr_xyhbond_nbd_refined
X-RAY DIFFRACTIONr_xyhbond_nbd_other
X-RAY DIFFRACTIONr_metal_ion_refined
X-RAY DIFFRACTIONr_metal_ion_other
X-RAY DIFFRACTIONr_symmetry_vdw_refined
X-RAY DIFFRACTIONr_symmetry_vdw_other
X-RAY DIFFRACTIONr_symmetry_hbond_refined
X-RAY DIFFRACTIONr_symmetry_hbond_other
X-RAY DIFFRACTIONr_symmetry_metal_ion_refined
X-RAY DIFFRACTIONr_symmetry_metal_ion_other
X-RAY DIFFRACTIONr_mcbond_it0.3851.512833
X-RAY DIFFRACTIONr_mcbond_other0.0571.55245
X-RAY DIFFRACTIONr_mcangle_it0.795220682
X-RAY DIFFRACTIONr_mcangle_other
X-RAY DIFFRACTIONr_scbond_it1.52938065
X-RAY DIFFRACTIONr_scbond_other
X-RAY DIFFRACTIONr_scangle_it2.8634.57809
X-RAY DIFFRACTIONr_scangle_other
X-RAY DIFFRACTIONr_long_range_B_refined
X-RAY DIFFRACTIONr_long_range_B_other
X-RAY DIFFRACTIONr_rigid_bond_restr
X-RAY DIFFRACTIONr_sphericity_free
X-RAY DIFFRACTIONr_sphericity_bonded
LS refinement shellResolution: 3.414→3.503 Å / Total num. of bins used: 20
RfactorNum. reflection% reflection
Rfree0.491 299 -
Rwork0.465 5915 -
obs--87.19 %
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
11.6367-0.5272-1.29011.65081.71293.71690.069-0.15150.4680.04410.07370.2426-0.3974-0.1729-0.14270.24520.0228-0.10270.10480.08690.46857.6382108.198864.8478
21.02550.1348-0.18132.20962.30974.43980.0062-0.20370.27750.130.0422-0.0689-0.24940.422-0.04840.1481-0.1305-0.13130.09380.00410.215237.06297.248274.9634
30.93380.2344-0.25680.92141.43246.25590.0806-0.1674-0.1210.167-0.16530.18370.227-0.3660.08470.1515-0.1314-0.08470.08490.07520.17310.229778.547378.521
41.64760.31490.17941.58921.52259.6994-0.12730.79540.0921-0.53830.00980.17880.0275-0.23650.11750.3115-0.1541-0.14970.44650.1090.130521.647283.845721.2282
53.3571-0.8816-2.84551.92651.3955.7713-0.18620.7057-0.3745-0.51230.0162-0.04330.07740.17980.170.2687-0.1348-0.04460.2989-0.06430.154937.574572.974328.719
61.66230.3180.06884.32553.19295.3728-0.35840.6034-0.367-0.48560.2690.17920.37210.18420.08940.308-0.1742-0.040.2436-0.07240.183318.590364.988429.1574
7-0.2759-2.90060.37562.66721.24634.0704-0.14790.130.1857-0.15310.42950.6494-1.6007-1.7758-0.28160.92840.2388-0.19961.74320.9961.6685-2.0124103.598820.6356
85.37143.0165-0.32383.002-0.3233.03980.0255-0.2592-0.34460.2213-0.1866-0.4573-0.02830.6820.16110.2841-0.0712-0.02970.47340.08880.097563.460589.425135.8807
92.69410.2998-0.51547.6572-0.9263.0325-0.182-0.3441-0.44740.14620.16130.14490.12240.02540.02060.1736-0.0642-0.00450.1097-0.08010.350513.766341.559949.1021
100.7311-1.39951.2826-0.85130.9999-0.3558-0.18120.7438-0.07180.2022-0.41151.1489-0.3621-0.87750.59260.7914-0.4595-0.33322.82760.53031.7062-11.375884.464716.836
113.99952.0870.25096.004-0.35323.7263-0.18780.35860.5373-0.2870.18860.3902-0.4645-0.0721-0.00080.256-0.1413-0.04020.44920.09770.107655.0333100.96719.3179
123.05220.2692-0.98165.3367-1.43823.34760.03570.0386-0.63130.1298-0.3133-1.13740.23050.69490.27760.2798-0.0501-0.10440.307-0.12560.811534.623938.739743.6153
136.115-1.44272.01626.7128-2.32052.74310.5144-0.72780.35121.1011-0.6154-0.7927-1.58930.75980.1011.1751-0.6896-0.14221.4717-0.06180.452989.2487116.384728.9973
147.8473-0.37161.6706-0.1517-2.06294.3152-0.4923-2.329-0.10290.312-0.1114-0.38030.37520.23450.60361.09620.2204-0.28050.7543-0.05231.536923.323311.250666.2946
155.2189-1.46610.79953.6289-1.62832.9546-0.1455-0.64930.00080.3485-0.1694-0.6613-0.28831.15640.31480.5828-0.4495-0.08710.93950.04360.37689.0595113.313512.937
165.51962.39671.03954.0647-1.70921.1731-0.1898-0.0496-0.4426-0.389-0.0889-0.70230.91280.36870.27871.08520.26670.22540.5454-0.02711.841229.99353.249953.6811
Refinement TLS group
IDRefine-IDRefine TLS-IDAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1A9 - 328
2X-RAY DIFFRACTION2C9 - 328
3X-RAY DIFFRACTION3E9 - 328
4X-RAY DIFFRACTION4B1 - 175
5X-RAY DIFFRACTION5D1 - 175
6X-RAY DIFFRACTION6F1 - 175
7X-RAY DIFFRACTION7G1 - 113
8X-RAY DIFFRACTION8I1 - 113
9X-RAY DIFFRACTION9K1 - 113
10X-RAY DIFFRACTION10H1 - 103
11X-RAY DIFFRACTION11J1 - 103
12X-RAY DIFFRACTION12L1 - 103
13X-RAY DIFFRACTION13I114 - 210
14X-RAY DIFFRACTION14K114 - 210
15X-RAY DIFFRACTION15J107 - 212
16X-RAY DIFFRACTION16L107 - 212

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  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

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