+Open data
-Basic information
Entry | Database: PDB / ID: 1c8f | |||||||||
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Title | FELINE PANLEUKOPENIA VIRUS EMPTY CAPSID STRUCTURE | |||||||||
Components | FELINE PANLEUKOPENIA VIRUS CAPSID | |||||||||
Keywords | VIRUS / beta barrel / viral capsid / icosahedral symmetry / Icosahedral virus | |||||||||
Function / homology | Function and homology information permeabilization of host organelle membrane involved in viral entry into host cell / symbiont entry into host cell via permeabilization of inner membrane / microtubule-dependent intracellular transport of viral material towards nucleus / T=1 icosahedral viral capsid / viral penetration into host nucleus / host cell / clathrin-dependent endocytosis of virus by host cell / host cell nucleus / virion attachment to host cell / structural molecule activity / metal ion binding Similarity search - Function | |||||||||
Biological species | Feline panleukopenia virus | |||||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / Resolution: 3 Å | |||||||||
Authors | Rossmann, M.G. / Simpson, A.A. | |||||||||
Citation | Journal: J.Mol.Biol. / Year: 2000 Title: Host range and variability of calcium binding by surface loops in the capsids of canine and feline parvoviruses. Authors: Simpson, A.A. / Chandrasekar, V. / Hebert, B. / Sullivan, G.M. / Rossmann, M.G. / Parrish, C.R. #1: Journal: Protein Sci. / Year: 1993 Title: Structure Determination of Feline Panleukopenia Virus Empty Particles Authors: Agbandje, M. / McKenna, R. / Rossmann, M.G. / Strassheim, M.L. / Parrish, C.R. #2: Journal: Acta Crystallogr.,Sect.D / Year: 1996 Title: Structural Refinement of the DNA-Containing Capsid of Canine Parvovirus using RSRef, a Resolution-Dependent Stereochemically Restrained Real-Space Refinement Method Authors: Chapman, M.S. / Rossmann, M.G. #3: Journal: Virology / Year: 1996 Title: Structural Analysis of a Mutation in Canine Parvovirus which Controls Antigenicity and Host Range Authors: Llamas-Saiz, A.L. / Agbandje-McKenna, M. / Parker, J.S. / Wahid, A.T. / Parrish, C.R. / Rossmann, M.G. #4: Journal: Science / Year: 1991 Title: The Three-Dimensional Structure of Canine Parvovirus and its Functional Implications Authors: Tsao, J. / Chapman, M.S. / Agbandje, M. / Keller, W. / Smith, K. / Wu, H. / Luo, M. / Smith, T.J. / Rossmann, M.G. / Compans, R.W. / Parrish, C.R. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1c8f.cif.gz | 125.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1c8f.ent.gz | 100.2 KB | Display | PDB format |
PDBx/mmJSON format | 1c8f.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1c8f_validation.pdf.gz | 419.9 KB | Display | wwPDB validaton report |
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Full document | 1c8f_full_validation.pdf.gz | 452.7 KB | Display | |
Data in XML | 1c8f_validation.xml.gz | 24.3 KB | Display | |
Data in CIF | 1c8f_validation.cif.gz | 31.6 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/c8/1c8f ftp://data.pdbj.org/pub/pdb/validation_reports/c8/1c8f | HTTPS FTP |
-Related structure data
-Links
-Assembly
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Unit cell |
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Symmetry | Point symmetry: (Hermann–Mauguin notation: 532 / Schoenflies symbol: I (icosahedral)) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Noncrystallographic symmetry (NCS) | NCS oper:
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