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Open data
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Basic information
Entry | Database: PDB / ID: 2cas | |||||||||
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Title | THE CANINE PARVOVIRUS EMPTY CAPSID STRUCTURE | |||||||||
![]() | CANINE PARVOVIRUS EMPTY CAPSID (STRAIN D) VIRAL PROTEIN 2 | |||||||||
![]() | VIRUS / PARVOVIRUS COAT PROTEIN / Icosahedral virus | |||||||||
Function / homology | ![]() permeabilization of host organelle membrane involved in viral entry into host cell / symbiont entry into host cell via permeabilization of inner membrane / microtubule-dependent intracellular transport of viral material towards nucleus / adhesion receptor-mediated virion attachment to host cell / T=1 icosahedral viral capsid / viral penetration into host nucleus / host cell / clathrin-dependent endocytosis of virus by host cell / entry receptor-mediated virion attachment to host cell / host cell nucleus ...permeabilization of host organelle membrane involved in viral entry into host cell / symbiont entry into host cell via permeabilization of inner membrane / microtubule-dependent intracellular transport of viral material towards nucleus / adhesion receptor-mediated virion attachment to host cell / T=1 icosahedral viral capsid / viral penetration into host nucleus / host cell / clathrin-dependent endocytosis of virus by host cell / entry receptor-mediated virion attachment to host cell / host cell nucleus / structural molecule activity / metal ion binding Similarity search - Function | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() | |||||||||
![]() | Wu, H. / Rossmann, M.G. | |||||||||
![]() | ![]() Title: The canine parvovirus empty capsid structure. Authors: Wu, H. / Rossmann, M.G. #1: ![]() Title: Determination and Refinement of the Canine Parvovirus Empty Capsid Structure Authors: Wu, H. / Keller, W. / Rossmann, M.G. #2: ![]() Title: Structure Determination of Monoclinic Canine Parvovirus Authors: Tsao, J. / Chapman, M.S. / Wu, H. / Agbandje, M. / Keller, W. / Rossmann, M.G. #3: ![]() Title: The Three-Dimensional Structure of Canine Parvovirus and its Functional Implications Authors: Tsao, J. / Chapman, M.S. / Agbandje, M. / Keller, W. / Smith, K. / Wu, H. / Luo, M. / Smith, T.J. / Rossmann, M.G. / Compans, R.W. / Parrish, C.R. #4: ![]() Title: Preliminary X-Ray Crystallographic Analysis of Canine Parvovirus Crystals Authors: Luo, M. / Tsao, J. / Rossmann, M.G. / Basak, S. / Compans, R.W. | |||||||||
History |
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Remark 700 | SHEET THE STRUCTURE OF CANINE PARVOVIRUS FOLLOWS THE CANONICAL PICORNA-VIRUS LIKE "JELLY ROLL" ...SHEET THE STRUCTURE OF CANINE PARVOVIRUS FOLLOWS THE CANONICAL PICORNA-VIRUS LIKE "JELLY ROLL" BARREL. THE SHEET IDENTIFIED AS "BDG" IS THAT REFERRED TO AS "BIDG" IN THE LITERATURE WITH STRANDS 1 TO 5 CORRESPONDING TO STRANDS A, B, I, D, AND G. THE SHEET IDENTIFIED AS "CHF" IS THE SO-CALLED CHEF SHEET WITH STRANDS 1 TO 4 CORRESPONDING TO STRANDS C, H, E, AND F. THESE TWO SHEETS ARE LOOSELY CONNECTED TOGETHER BY HYDROGEN BONDS BETWEEN STRAND 4 OF "CHF" AND RESIDUE 45 IMMEDIATELY PRECEDING STRAND 1 OF "BDG" OF A FIVE-FOLD RELATED PROTOMER THAT IS NOT EXPLICITLY PRESENTED ON THE ATOM RECORDS, BUT WHICH CAN BE GENERATED USING THE SYMMETRY OPERATORS LISTED BELOW. CPV CONTAINS SEVERAL LONG LOOPS BETWEEN STRANDS OF "BDG" AND "CHF" WITH ONLY A FEW ORGANIZED SECONDARY STRUCTURES. |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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PDBx/mmCIF format | ![]() | 123.6 KB | Display | ![]() |
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PDB format | ![]() | 95.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 369.9 KB | Display | ![]() |
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Full document | ![]() | 417.8 KB | Display | |
Data in XML | ![]() | 18.7 KB | Display | |
Data in CIF | ![]() | 26.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Assembly
Deposited unit | ![]()
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Unit cell |
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Atom site foot note | 1: ELECTRON DENSITY FOR RESIDUES 155 - 163 AND 361 - 372 IS WEAK. 2: CIS PROLINE - PRO 465 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Symmetry | Point symmetry: (Hermann–Mauguin notation: 532 / Schoenflies symbol: I (icosahedral)) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Noncrystallographic symmetry (NCS) | NCS oper:
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