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- SASDEH6: BS69 (CC-MYND: Zinc finger MYND domain-containing protein 11, ami... -

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Open data


ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDEH6
SampleBS69 (CC-MYND: Zinc finger MYND domain-containing protein 11, amino acids 480-602)
  • Zinc finger MYND domain-containing protein 11 (protein), BS69 CC-MYND, Homo sapiens
Function / homologyIsoform 1 of Zinc finger MYND domain-containing protein 11
Function and homology information
Biological speciesHomo sapiens (human)
CitationDate: 2018 Nov 6
Title: Increased association between Epstein-Barr virus EBNA2 from type 2 strains and the transcriptional repressor BS69 restricts B cell growth
Authors: Ponnusamy R / Khatri R / Correia P / Mancini E / Farrell P
Contact author
  • Rajesh Ponnusamy (University of Sussex, Brighton, UK)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #2539
Type: dummy / Radius of dummy atoms: 3.00 A / Chi-square value: 1.326
Search similar-shape structures of this assembly by Omokage search (details)
Model #2548
Type: dummy / Radius of dummy atoms: 3.00 A / Chi-square value: 1.326
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: BS69 (CC-MYND: Zinc finger MYND domain-containing protein 11, amino acids 480-602)
Specimen concentration: 15 mg/ml
BufferName: 20mM Tris-HCl, 100mM NaCl, 2% Sucrose and 1mM TCEP / pH: 7.5
Entity #1343Name: BS69 CC-MYND / Type: protein / Description: Zinc finger MYND domain-containing protein 11 / Formula weight: 15.064 / Num. of mol.: 4 / Source: Homo sapiens / References: UniProt: Q15326-1
Sequence:
DRMKSDHKRE TERVVREALE KLRSEMEEEK RQAVNKAVAN MQGEMDRKCK QVKEKCKEEF VEEIKKLATQ HKQLISQTKK KQWCYNCEEE AMYHCCWNTS YCSIKCQQEH WHAEHKRTCR RKR

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Experimental information

BeamInstrument name: Diamond Light Source B21 / City: Didcot / 国: UK / Shape: 1 x 5 mm / Type of source: X-ray synchrotron / Wavelength: 0.1 Å / Dist. spec. to detc.: 4.014 mm
DetectorName: Pilatus 2M
Scan
Title: BS69 (CC-MYND: Zinc finger MYND domain-containing protein 11, amino acids 480-602)
Measurement date: Sep 23, 2017 / Storage temperature: 4 °C / Cell temperature: 25 °C / Exposure time: 3 sec. / Number of frames: 30 / Unit: 1/A /
MinMax
Q0.0078 0.3342
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 1413 /
MinMax
Q0.0077542 0.334227
P(R) point1 1413
R0 169
Result
Type of curve: sec
Comments: SEC-SAXS was performed using the following parameters: Column type: S200 3.2/300 increase; Flow rate: 0.075 ml/min; Injection volume: 45 µl; Sample injection concentration: 15.0 mg/ml.
ExperimentalPorod
MW67.1 kDa-
Volume-83 nm3

P(R)GuinierGuinier error
Forward scattering, I00.09503 0.09629 0.00019
Radius of gyration, Rg5.33 nm5.3 nm0.02

MinMax
D-16.9
Guinier point8 65

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