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- SASDEK6: Complex of Epstein-Barr nuclear antigen 2 (EBNA2 Type2, amino aci... -
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Open data
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Basic information
Entry | Database: SASBDB / ID: SASDEK6 |
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![]() | Complex of Epstein-Barr nuclear antigen 2 (EBNA2 Type2, amino acids 348-422) and BS69 (Zinc finger MYND domain-containing protein 11: CC-MYND, amino acids 480-602)
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Function / homology | : / : / host cell nuclear matrix / symbiont-mediated suppression of host type I interferon-mediated signaling pathway / Isoform 1 of Zinc finger MYND domain-containing protein 11 / Epstein-Barr nuclear antigen 2![]() |
Biological species | ![]() ![]() |
![]() | ![]() Title: Increased association between Epstein-Barr virus EBNA2 from type 2 strains and the transcriptional repressor BS69 restricts B cell growth Authors: Ponnusamy R / Khatri R / Correia P / Mancini E / Farrell P |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
-Models
Model #2543 | ![]() Type: dummy / Radius of dummy atoms: 4.25 A / Chi-square value: 1.001 / P-value: 0.493446 ![]() |
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Model #2550 | ![]() Type: dummy / Radius of dummy atoms: 4.25 A / Chi-square value: 1.001 / P-value: 0.493446 ![]() |
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Sample
![]() | Name: Complex of Epstein-Barr nuclear antigen 2 (EBNA2 Type2, amino acids 348-422) and BS69 (Zinc finger MYND domain-containing protein 11: CC-MYND, amino acids 480-602) Specimen concentration: 9 mg/ml / Entity id: 1342 / 1345 |
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Buffer | Name: 20mM Tris-HCl, 100mM NaCl, 2% Sucrose and 1mM TCEP / pH: 7.5 |
Entity #1342 | Name: EBNA2 Type2 / Type: protein / Description: Epstein-Barr nuclear antigen 2 / Formula weight: 7.934 / Num. of mol.: 2 / Source: Epstein-Barr virus (strain AG876) / References: UniProt: Q69022 Sequence: SMPQLSPVVS LHQGQGPENS PTPGPSTAGP VCRVTPSATP DISPIHEPES SDSEEPPFLF PSDWYPPTLE PAELD |
Entity #1345 | Name: BS69 CC-MYND / Type: protein / Description: Zinc finger MYND domain-containing protein 11 / Formula weight: 15.064 / Num. of mol.: 6 / Source: Homo sapiens / References: UniProt: Q15326-1 Sequence: DRMKSDHKRE TERVVREALE KLRSEMEEEK RQAVNKAVAN MQGEMDRKCK QVKEKCKEEF VEEIKKLATQ HKQLISQTKK KQWCYNCEEE AMYHCCWNTS YCSIKCQQEH WHAEHKRTCR RKR |
-Experimental information
Beam | Instrument name: Diamond Light Source B21 / City: Didcot / 国: UK ![]() | ||||||||||||||||||||||||||||||
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Detector | Name: Pilatus 2M | ||||||||||||||||||||||||||||||
Scan | Measurement date: Sep 23, 2017 / Storage temperature: 4 °C / Cell temperature: 25 °C / Exposure time: 3 sec. / Number of frames: 33 / Unit: 1/A /
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Distance distribution function P(R) |
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Result | Comments: SEC-SAXS was performed using the following parameters: Column type: S200 3.2/300 increase; Flow rate: 0.075 ml/min; Injection volume: 45 µl; Sample injection concentration: 9.0 mg/ml. The ...Comments: SEC-SAXS was performed using the following parameters: Column type: S200 3.2/300 increase; Flow rate: 0.075 ml/min; Injection volume: 45 µl; Sample injection concentration: 9.0 mg/ml. The molar ratio of the injected sample components was 1:3 (EBNA2:BS69). The final complex contains six BS69 CC-MYND (3 dimers) with two EBNA2 Type2 (348-422) polypeptides.
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