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Yorodumi- PDB-7bgu: Mason-Pfizer Monkey Virus Protease mutant C7A/D26N/C106A in compl... -
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-Basic information
Entry | Database: PDB / ID: 7bgu | ||||||
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Title | Mason-Pfizer Monkey Virus Protease mutant C7A/D26N/C106A in complex with peptidomimetic inhibitor | ||||||
Components |
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Keywords | HYDROLASE / Mason-Pfizer Monkey Virus / M-PMV / retropepsin / active site inhibitor / active site mutant | ||||||
Function / homology | Function and homology information dUTP diphosphatase / dUTP diphosphatase activity / Hydrolases; Acting on peptide bonds (peptidases); Aspartic endopeptidases / ribonuclease H / DNA integration / viral genome integration into host DNA / RNA-directed DNA polymerase / establishment of integrated proviral latency / RNA stem-loop binding / RNA-directed DNA polymerase activity ...dUTP diphosphatase / dUTP diphosphatase activity / Hydrolases; Acting on peptide bonds (peptidases); Aspartic endopeptidases / ribonuclease H / DNA integration / viral genome integration into host DNA / RNA-directed DNA polymerase / establishment of integrated proviral latency / RNA stem-loop binding / RNA-directed DNA polymerase activity / RNA-DNA hybrid ribonuclease activity / Transferases; Transferring phosphorus-containing groups; Nucleotidyltransferases / viral nucleocapsid / DNA recombination / structural constituent of virion / DNA-directed DNA polymerase / Hydrolases; Acting on ester bonds / aspartic-type endopeptidase activity / DNA-directed DNA polymerase activity / symbiont entry into host cell / viral translational frameshifting / proteolysis / DNA binding / zinc ion binding Similarity search - Function | ||||||
Biological species | Mason-Pfizer monkey virus synthetic construct (others) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.433 Å | ||||||
Authors | Wosicki, S. / Gilski, M. / Kazmierczyk, M. / Jaskolski, M. / Zabranska, H. / Pichova, I. | ||||||
Funding support | Czech Republic, 1items
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Citation | Journal: Protein Sci. / Year: 2021 Title: Crystal structures of inhibitor complexes of M-PMV protease with visible flap loops. Authors: Wosicki, S. / Kazmierczyk, M. / Gilski, M. / Zabranska, H. / Pichova, I. / Jaskolski, M. #1: Journal: Acta Crystallogr D Struct Biol / Year: 2019 Title: Comparison of a retroviral protease in monomeric and dimeric states. Authors: Wosicki, S. / Gilski, M. / Zabranska, H. / Pichova, I. / Jaskolski, M. #2: Journal: Acta Crystallogr. D Biol. Crystallogr. / Year: 2011 Title: High-resolution structure of a retroviral protease folded as a monomer. Authors: Gilski, M. / Kazmierczyk, M. / Krzywda, S. / Zabranska, H. / Cooper, S. / Popovic, Z. / Khatib, F. / DiMaio, F. / Thompson, J. / Baker, D. / Pichova, I. / Jaskolski, M. #3: Journal: Nature / Year: 1989 Title: Crystal structure of a retroviral protease proves relationship to aspartic protease family. Authors: Miller, M. / Jaskolski, M. / Rao, J.K. / Leis, J. / Wlodawer, A. #4: Journal: Science / Year: 1989 Title: Conserved folding in retroviral proteases: crystal structure of a synthetic HIV-1 protease. Authors: Wlodawer, A. / Miller, M. / Jaskolski, M. / Sathyanarayana, B.K. / Baldwin, E. / Weber, I.T. / Selk, L.M. / Clawson, L. / Schneider, J. / Kent, S.B. #5: Journal: Nat. Struct. Mol. Biol. / Year: 2011 Title: Crystal structure of a monomeric retroviral protease solved by protein folding game players. Authors: Khatib, F. / DiMaio, F. / Cooper, S. / Kazmierczyk, M. / Gilski, M. / Krzywda, S. / Zabranska, H. / Pichova, I. / Thompson, J. / Popovic, Z. / Jaskolski, M. / Baker, D. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 7bgu.cif.gz | 198.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb7bgu.ent.gz | 158.3 KB | Display | PDB format |
PDBx/mmJSON format | 7bgu.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 7bgu_validation.pdf.gz | 475.8 KB | Display | wwPDB validaton report |
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Full document | 7bgu_full_validation.pdf.gz | 480.8 KB | Display | |
Data in XML | 7bgu_validation.xml.gz | 20.5 KB | Display | |
Data in CIF | 7bgu_validation.cif.gz | 28 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/bg/7bgu ftp://data.pdbj.org/pub/pdb/validation_reports/bg/7bgu | HTTPS FTP |
-Related structure data
Related structure data | 7bgtC 6s1vS S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data | |
Experimental dataset #1 | Data reference: 10.18150/C9DYSH / Data set type: diffraction image data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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