+データを開く
-基本情報
登録情報 | データベース: PDB / ID: 6bb4 | |||||||||
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タイトル | Fab/epitope complex of mouse monoclonal antibody C5.2 targeting a phospho-tau epitope. | |||||||||
要素 |
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キーワード | IMMUNE SYSTEM / monoclonal antibody / fab / tau / phosphorylation state -specific antibody | |||||||||
機能・相同性 | 機能・相同性情報 plus-end-directed organelle transport along microtubule / axonal transport / histone-dependent DNA binding / neurofibrillary tangle assembly / positive regulation of diacylglycerol kinase activity / negative regulation of establishment of protein localization to mitochondrion / neurofibrillary tangle / positive regulation of protein localization to synapse / microtubule lateral binding / tubulin complex ...plus-end-directed organelle transport along microtubule / axonal transport / histone-dependent DNA binding / neurofibrillary tangle assembly / positive regulation of diacylglycerol kinase activity / negative regulation of establishment of protein localization to mitochondrion / neurofibrillary tangle / positive regulation of protein localization to synapse / microtubule lateral binding / tubulin complex / phosphatidylinositol bisphosphate binding / main axon / regulation of long-term synaptic depression / negative regulation of kinase activity / negative regulation of tubulin deacetylation / generation of neurons / regulation of chromosome organization / positive regulation of protein localization / rRNA metabolic process / internal protein amino acid acetylation / regulation of mitochondrial fission / intracellular distribution of mitochondria / axonal transport of mitochondrion / axon development / central nervous system neuron development / regulation of microtubule polymerization / microtubule polymerization / minor groove of adenine-thymine-rich DNA binding / lipoprotein particle binding / dynactin binding / apolipoprotein binding / glial cell projection / negative regulation of mitochondrial membrane potential / protein polymerization / negative regulation of mitochondrial fission / axolemma / Caspase-mediated cleavage of cytoskeletal proteins / regulation of microtubule polymerization or depolymerization / positive regulation of axon extension / regulation of microtubule cytoskeleton organization / Activation of AMPK downstream of NMDARs / supramolecular fiber organization / regulation of cellular response to heat / stress granule assembly / cytoplasmic microtubule organization / regulation of calcium-mediated signaling / axon cytoplasm / positive regulation of microtubule polymerization / somatodendritic compartment / cellular response to brain-derived neurotrophic factor stimulus / synapse assembly / phosphatidylinositol binding / nuclear periphery / cellular response to nerve growth factor stimulus / positive regulation of superoxide anion generation / protein phosphatase 2A binding / regulation of autophagy / astrocyte activation / response to lead ion / synapse organization / microglial cell activation / Hsp90 protein binding / regulation of synaptic plasticity / PKR-mediated signaling / protein homooligomerization / memory / cytoplasmic ribonucleoprotein granule / cellular response to reactive oxygen species / SH3 domain binding / microtubule cytoskeleton organization / activation of cysteine-type endopeptidase activity involved in apoptotic process / neuron projection development / microtubule cytoskeleton / cell-cell signaling / protein-macromolecule adaptor activity / actin binding / single-stranded DNA binding / cellular response to heat / protein-folding chaperone binding / cell body / growth cone / microtubule binding / double-stranded DNA binding / microtubule / amyloid fibril formation / sequence-specific DNA binding / dendritic spine / learning or memory / nuclear speck / neuron projection / membrane raft / axon / negative regulation of gene expression / neuronal cell body / DNA damage response / dendrite / protein kinase binding / enzyme binding / mitochondrion / DNA binding 類似検索 - 分子機能 | |||||||||
生物種 | Mus musculus (ハツカネズミ) Homo sapiens (ヒト) | |||||||||
手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 2.099 Å | |||||||||
データ登録者 | Chukwu, J.E. / Kong, X.-P. | |||||||||
資金援助 | 米国, 2件
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引用 | ジャーナル: Sci Rep / 年: 2018 タイトル: Tau Antibody Structure Reveals a Molecular Switch Defining a Pathological Conformation of the Tau Protein. 著者: Chukwu, J.E. / Pedersen, J.T. / Pedersen, L.O. / Volbracht, C. / Sigurdsson, E.M. / Kong, X.P. | |||||||||
履歴 |
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-構造の表示
構造ビューア | 分子: MolmilJmol/JSmol |
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-ダウンロードとリンク
-ダウンロード
PDBx/mmCIF形式 | 6bb4.cif.gz | 274.9 KB | 表示 | PDBx/mmCIF形式 |
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PDB形式 | pdb6bb4.ent.gz | 227.9 KB | 表示 | PDB形式 |
PDBx/mmJSON形式 | 6bb4.json.gz | ツリー表示 | PDBx/mmJSON形式 | |
その他 | その他のダウンロード |
-検証レポート
文書・要旨 | 6bb4_validation.pdf.gz | 1.4 MB | 表示 | wwPDB検証レポート |
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文書・詳細版 | 6bb4_full_validation.pdf.gz | 1.4 MB | 表示 | |
XML形式データ | 6bb4_validation.xml.gz | 55.8 KB | 表示 | |
CIF形式データ | 6bb4_validation.cif.gz | 80.6 KB | 表示 | |
アーカイブディレクトリ | https://data.pdbj.org/pub/pdb/validation_reports/bb/6bb4 ftp://data.pdbj.org/pub/pdb/validation_reports/bb/6bb4 | HTTPS FTP |
-関連構造データ
類似構造データ |
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-リンク
-集合体
登録構造単位 |
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単位格子 |
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Components on special symmetry positions |
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-要素
#1: 抗体 | 分子量: 23574.035 Da / 分子数: 3 / 由来タイプ: 天然 / 由来: (天然) Mus musculus (ハツカネズミ) #2: 抗体 | 分子量: 23728.580 Da / 分子数: 3 / 由来タイプ: 天然 / 由来: (天然) Mus musculus (ハツカネズミ) #3: タンパク質・ペプチド | 分子量: 2629.664 Da / 分子数: 3 / 由来タイプ: 合成 / 由来: (合成) Homo sapiens (ヒト) / 参照: UniProt: P10636 #4: 化合物 | #5: 水 | ChemComp-HOH / | |
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-実験情報
-実験
実験 | 手法: X線回折 / 使用した結晶の数: 1 |
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-試料調製
結晶 | マシュー密度: 2.53 Å3/Da / 溶媒含有率: 51.43 % |
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結晶化 | 温度: 277 K / 手法: 蒸気拡散法, シッティングドロップ法 詳細: 25.5% polyethylene glycol 4000, 0.17 M ammonium sulfate, 15% glycerol |
-データ収集
回折 | 平均測定温度: 100 K |
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放射光源 | 由来: シンクロトロン / サイト: SSRL / ビームライン: BL14-1 / 波長: 0.979 Å |
検出器 | タイプ: MARMOSAIC 325 mm CCD / 検出器: CCD / 日付: 2015年7月20日 詳細: Flat bent collimating Rh coated mirror, toroidal focussing mirror |
放射 | モノクロメーター: Si (111) double crystal / プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray |
放射波長 | 波長: 0.979 Å / 相対比: 1 |
反射 | 解像度: 2.099→44.25 Å / Num. obs: 84763 / % possible obs: 99.51 % / 冗長度: 4.2 % / CC1/2: 0.999 / Rmerge(I) obs: 0.06924 / Rpim(I) all: 0.03851 / Rrim(I) all: 0.07945 / Net I/σ(I): 12.34 |
反射 シェル | 解像度: 2.099→2.174 Å / 冗長度: 4.2 % / Rmerge(I) obs: 0.5445 / Mean I/σ(I) obs: 2.51 / Num. unique obs: 8330 / CC1/2: 0.89 / Rpim(I) all: 0.3028 / Rrim(I) all: 0.6245 / % possible all: 99.32 |
-解析
ソフトウェア |
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精密化 | 構造決定の手法: 分子置換 / 解像度: 2.099→44.25 Å / 交差検証法: FREE R-VALUE
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精密化ステップ | サイクル: LAST / 解像度: 2.099→44.25 Å
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