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Yorodumi- PDB-5t78: Crystal structure of therapeutic mAB AR20.5 in complex with MUC1 ... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 5t78 | ||||||
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| Title | Crystal structure of therapeutic mAB AR20.5 in complex with MUC1 peptide | ||||||
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Keywords | IMMUNE SYSTEM / antibody / Fab | ||||||
| Function / homology | Function and homology informationDefective GALNT3 causes HFTC / Defective C1GALT1C1 causes TNPS / Defective GALNT12 causes CRCS1 / Termination of O-glycan biosynthesis / O-linked glycosylation of mucins / negative regulation of cell adhesion mediated by integrin / negative regulation of transcription by competitive promoter binding / negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator / Dectin-2 family / mitotic G1 DNA damage checkpoint signaling ...Defective GALNT3 causes HFTC / Defective C1GALT1C1 causes TNPS / Defective GALNT12 causes CRCS1 / Termination of O-glycan biosynthesis / O-linked glycosylation of mucins / negative regulation of cell adhesion mediated by integrin / negative regulation of transcription by competitive promoter binding / negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator / Dectin-2 family / mitotic G1 DNA damage checkpoint signaling / transcription coregulator activity / DNA damage response, signal transduction by p53 class mediator / Golgi lumen / p53 binding / Interleukin-4 and Interleukin-13 signaling / vesicle / apical plasma membrane / RNA polymerase II cis-regulatory region sequence-specific DNA binding / chromatin / positive regulation of transcription by RNA polymerase II / extracellular space / extracellular exosome / nucleus / plasma membrane Similarity search - Function | ||||||
| Biological species | ![]() Homo sapiens (human) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.2 Å | ||||||
Authors | Brooks, C.L. / Movahedin, M. | ||||||
Citation | Journal: Glycobiology / Year: 2017Title: Glycosylation of MUC1 influences the binding of a therapeutic antibody by altering the conformational equilibrium of the antigen. Authors: Movahedin, M. / Brooks, T.M. / Supekar, N.T. / Gokanapudi, N. / Boons, G.J. / Brooks, C.L. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 5t78.cif.gz | 490.7 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb5t78.ent.gz | 413.8 KB | Display | PDB format |
| PDBx/mmJSON format | 5t78.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 5t78_validation.pdf.gz | 479.2 KB | Display | wwPDB validaton report |
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| Full document | 5t78_full_validation.pdf.gz | 481.6 KB | Display | |
| Data in XML | 5t78_validation.xml.gz | 30 KB | Display | |
| Data in CIF | 5t78_validation.cif.gz | 42.6 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/t7/5t78 ftp://data.pdbj.org/pub/pdb/validation_reports/t7/5t78 | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 5t6pSC S: Starting model for refinement C: citing same article ( |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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Homo sapiens (human)
X-RAY DIFFRACTION
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