[English] 日本語
Yorodumi
- PDB-5d8b: Crystal structure of T. thermophilus ribosome containing a P-site... -

+
Open data


ID or keywords:

Loading...

-
Basic information

Entry
Database: PDB / ID: 5d8b
TitleCrystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
Components
  • (30S ribosomal protein ...) x 20
  • (50S ribosomal protein ...) x 29
  • 16S ribosomal RNA
  • 23S ribosomal RNA
  • 5S ribosomal RNA
  • mRNAMessenger RNA
  • tRNATransfer RNA
KeywordsTRANSLATION / non-AUG initiation / wobble mismatch / cytosine-cytosine mismatch / ribosome
Function / homology
Function and homology information


large ribosomal subunit rRNA binding / large ribosomal subunit / small ribosomal subunit / 5S rRNA binding / transferase activity / tRNA binding / rRNA binding / ribosome / structural constituent of ribosome / ribonucleoprotein complex ...large ribosomal subunit rRNA binding / large ribosomal subunit / small ribosomal subunit / 5S rRNA binding / transferase activity / tRNA binding / rRNA binding / ribosome / structural constituent of ribosome / ribonucleoprotein complex / translation / mRNA binding / zinc ion binding / metal ion binding / cytoplasm
Similarity search - Function
30S ribosomal protein Thx / 30S ribosomal protein Thx / 30S ribosomal protein / Ribosomal protein L25, long-form / Ribosomal protein L25, beta domain / Ribosomal protein L25, C-terminal / Ribosomal protein TL5, C-terminal domain / Ribosomal protein S14, type Z / Ribosomal protein L11, bacterial-type / Ribosomal protein L31 type A ...30S ribosomal protein Thx / 30S ribosomal protein Thx / 30S ribosomal protein / Ribosomal protein L25, long-form / Ribosomal protein L25, beta domain / Ribosomal protein L25, C-terminal / Ribosomal protein TL5, C-terminal domain / Ribosomal protein S14, type Z / Ribosomal protein L11, bacterial-type / Ribosomal protein L31 type A / Ribosomal protein L31 signature. / Ribosomal protein L31 / Ribosomal protein L31 superfamily / Ribosomal protein L31 / Ribosomal protein L11, conserved site / Ribosomal protein L11 signature. / Ribosomal protein L11, N-terminal / Ribosomal protein L9 signature. / Ribosomal protein L9, bacteria/chloroplast / Ribosomal protein L9, C-terminal / Ribosomal protein L9, C-terminal domain / Ribosomal protein L9, C-terminal domain superfamily / Ribosomal protein L11/L12 / Ribosomal protein L11, C-terminal / Ribosomal protein L11, C-terminal domain superfamily / Ribosomal protein L11/L12, N-terminal domain superfamily / Ribosomal protein L11/L12 / Ribosomal protein L11, N-terminal domain / Ribosomal protein L11, RNA binding domain / Ribosomal L25p family / Ribosomal protein L25 / Ribosomal protein S14/S29 / Ribosomal protein L25/Gln-tRNA synthetase, N-terminal / Ribosomal protein L32p, bacterial type / Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily / Ribosomal protein L9, N-terminal domain superfamily / Ribosomal protein L9 / Ribosomal protein L9, N-terminal / Ribosomal protein L9, N-terminal domain / Ribosomal protein L28 / Ribosomal protein L35, conserved site / Ribosomal protein L35 signature. / Ribosomal protein L33, conserved site / Ribosomal protein L33 signature. / Ribosomal protein L35, non-mitochondrial / Ribosomal protein L5, bacterial-type / Ribosomal protein L6, bacterial-type / Ribosomal protein L18, bacterial-type / Ribosomal protein L19, conserved site / Ribosomal protein L19 signature. / Ribosomal protein L9/RNase H1, N-terminal / Ribosomal protein L20 signature. / Ribosomal protein S3, bacterial-type / Ribosomal protein S6, conserved site / Ribosomal protein S6 signature. / Ribosomal protein L27, conserved site / Ribosomal protein L27 signature. / Ribosomal protein S19, bacterial-type / Ribosomal protein S7, bacterial/organellar-type / Ribosomal protein S11, bacterial-type / Ribosomal protein S13, bacterial-type / Ribosomal protein S20 / Ribosomal protein S20 superfamily / Ribosomal protein S20 / Ribosomal protein S9, bacterial/plastid / Ribosomal protein S4, bacterial-type / Ribosomal protein L14P, bacterial-type / Ribosomal protein L34, conserved site / Ribosomal protein L34 signature. / 30S ribosomal protein S17 / Ribosomal protein S5, bacterial-type / Ribosomal protein L22, bacterial/chloroplast-type / Ribosomal protein S6, plastid/chloroplast / Ribosomal protein L35 / Ribosomal protein L35 superfamily / Ribosomal protein L2, bacterial/organellar-type / Ribosomal protein L35 / Ribosomal protein S2, bacteria/mitochondria/plastid / Ribosomal L28 family / Ribosomal protein L33 / Ribosomal protein L33 / Ribosomal protein L28/L24 / Ribosomal protein L33 superfamily / : / Ribosomal protein L30, bacterial-type / Ribosomal protein L16 / Ribosomal protein L18 / Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast / Ribosomal protein S18, conserved site / Ribosomal protein S18 signature. / L28p-like / Ribosomal protein L20 / Ribosomal protein S16 / Ribosomal protein S16 / Ribosomal protein S16 domain superfamily / Ribosomal protein L20 / Ribosomal protein L20, C-terminal / Ribosomal protein L21 / Ribosomal protein L27 / Ribosomal L27 protein
Similarity search - Domain/homology
: / : / RNA / RNA (> 10) / RNA (> 100) / RNA (> 1000) / Small ribosomal subunit protein uS14 / Small ribosomal subunit protein uS17 / Large ribosomal subunit protein uL6 / Small ribosomal subunit protein uS8 ...: / : / RNA / RNA (> 10) / RNA (> 100) / RNA (> 1000) / Small ribosomal subunit protein uS14 / Small ribosomal subunit protein uS17 / Large ribosomal subunit protein uL6 / Small ribosomal subunit protein uS8 / Small ribosomal subunit protein uS7 / Large ribosomal subunit protein bL33 / Large ribosomal subunit protein uL2 / Large ribosomal subunit protein uL13 / Large ribosomal subunit protein uL16 / Large ribosomal subunit protein bL19 / Large ribosomal subunit protein bL20 / Large ribosomal subunit protein bL21 / Large ribosomal subunit protein bL27 / Large ribosomal subunit protein bL28 / Small ribosomal subunit protein uS12 / Small ribosomal subunit protein bS16 / Large ribosomal subunit protein uL11 / Small ribosomal subunit protein bTHX / Large ribosomal subunit protein bL32 / Small ribosomal subunit protein uS10 / Small ribosomal subunit protein uS11 / Small ribosomal subunit protein uS13 / Small ribosomal subunit protein uS14 / Small ribosomal subunit protein uS15 / Small ribosomal subunit protein uS17 / Small ribosomal subunit protein bS18 / Small ribosomal subunit protein uS19 / Small ribosomal subunit protein bS20 / Small ribosomal subunit protein uS2 / Small ribosomal subunit protein uS3 / Small ribosomal subunit protein uS4 / Small ribosomal subunit protein uS5 / Small ribosomal subunit protein bS6 / Small ribosomal subunit protein uS7 / Small ribosomal subunit protein uS8 / Small ribosomal subunit protein uS9 / Large ribosomal subunit protein bL32 / Large ribosomal subunit protein bL34 / Small ribosomal subunit protein uS2 / Small ribosomal subunit protein uS3 / Small ribosomal subunit protein uS4 / Small ribosomal subunit protein uS9 / Small ribosomal subunit protein uS11 / Small ribosomal subunit protein uS13 / Small ribosomal subunit protein bS20 / Small ribosomal subunit protein uS12 / Small ribosomal subunit protein uS10 / Large ribosomal subunit protein uL3 / Large ribosomal subunit protein uL4 / Large ribosomal subunit protein uL23 / Small ribosomal subunit protein uS19 / Large ribosomal subunit protein uL22 / Large ribosomal subunit protein uL29 / Large ribosomal subunit protein uL14 / Large ribosomal subunit protein uL24 / Large ribosomal subunit protein uL5 / Large ribosomal subunit protein uL18 / Small ribosomal subunit protein uS5 / Large ribosomal subunit protein uL30 / Large ribosomal subunit protein uL15 / Large ribosomal subunit protein bL25 / Small ribosomal subunit protein bTHX / Small ribosomal subunit protein uS15 / Large ribosomal subunit protein bL31 / Small ribosomal subunit protein bS16 / Large ribosomal subunit protein bL35 / Large ribosomal subunit protein uL11 / Small ribosomal subunit protein bS6 / Small ribosomal subunit protein bS18 / Large ribosomal subunit protein bL9 / Large ribosomal subunit protein bL28 / Large ribosomal subunit protein bL9 / Large ribosomal subunit protein bL33 / Large ribosomal subunit protein bL21 / Large ribosomal subunit protein bL27 / Large ribosomal subunit protein uL3 / Large ribosomal subunit protein uL4 / Large ribosomal subunit protein uL23 / Large ribosomal subunit protein uL2 / Large ribosomal subunit protein uL22 / Large ribosomal subunit protein uL16 / Large ribosomal subunit protein uL29 / Large ribosomal subunit protein uL14 / Large ribosomal subunit protein uL24 / Large ribosomal subunit protein uL5 / Large ribosomal subunit protein uL6 / Large ribosomal subunit protein uL18 / Large ribosomal subunit protein uL30 / Large ribosomal subunit protein uL15 / Large ribosomal subunit protein bL17 / Large ribosomal subunit protein bL25 / Large ribosomal subunit protein uL13 / Large ribosomal subunit protein bL31 / Large ribosomal subunit protein bL19
Similarity search - Component
Biological speciesThermus thermophilus (bacteria)
Thermus thermophilus HB27 (bacteria)
Escherichia coli (E. coli)
synthetic construct (others)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.63 Å
AuthorsSvidritskiy, E. / Korostelev, A.A.
Funding support United States, 2items
OrganizationGrant numberCountry
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)GM106105 United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)GM107465 United States
CitationJournal: Structure / Year: 2015
Title: Ribosome Structure Reveals Preservation of Active Sites in the Presence of a P-Site Wobble Mismatch.
Authors: Svidritskiy, E. / Korostelev, A.A.
History
DepositionAug 17, 2015Deposition site: RCSB / Processing site: RCSB
Revision 1.0Oct 14, 2015Provider: repository / Type: Initial release
Revision 1.1Nov 18, 2015Group: Database references
Revision 1.2Sep 13, 2017Group: Author supporting evidence / Database references / Derived calculations
Category: citation / pdbx_audit_support / pdbx_struct_oper_list
Item: _citation.journal_id_CSD / _pdbx_audit_support.funding_organization / _pdbx_struct_oper_list.symmetry_operation
Revision 1.3Dec 25, 2019Group: Advisory / Author supporting evidence / Category: pdbx_audit_support / pdbx_unobs_or_zero_occ_atoms / Item: _pdbx_audit_support.funding_organization
Revision 1.4Sep 27, 2023Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_struct_conn_angle / struct_conn
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr2_auth_seq_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_ptnr1_PDB_ins_code / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id

-
Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

-
Assembly

Deposited unit
A: 50S ribosomal protein L2
B: 50S ribosomal protein L3
C: 50S ribosomal protein L4
D: 50S ribosomal protein L5
E: 50S ribosomal protein L6
F: 50S ribosomal protein L9
G: 50S ribosomal protein L11
H: 50S ribosomal protein L13
I: 50S ribosomal protein L14
J: 50S ribosomal protein L15
K: 50S ribosomal protein L16
L: 50S ribosomal protein L17
M: 50S ribosomal protein L18
N: 50S ribosomal protein L19
O: 50S ribosomal protein L20
P: 50S ribosomal protein L21
Q: 50S ribosomal protein L22
R: 50S ribosomal protein L23
S: 50S ribosomal protein L24
T: 50S ribosomal protein L25
U: 50S ribosomal protein L27
V: 50S ribosomal protein L28
W: 50S ribosomal protein L29
X: 50S ribosomal protein L30
Y: 50S ribosomal protein L32
Z: 50S ribosomal protein L33
AA: 50S ribosomal protein L34
BA: 50S ribosomal protein L35
CA: 30S ribosomal protein S2
DA: 30S ribosomal protein S3
EA: 30S ribosomal protein S4
FA: 30S ribosomal protein S5
GA: 30S ribosomal protein S6
HA: 30S ribosomal protein S7
IA: 30S ribosomal protein S8
JA: 30S ribosomal protein S9
KA: 30S ribosomal protein S10
LA: 30S ribosomal protein S11
MA: 30S ribosomal protein S12
NA: 30S ribosomal protein S13
OA: 30S ribosomal protein S14
PA: 30S ribosomal protein S15
QA: 30S ribosomal protein S16
RA: 30S ribosomal protein S17
SA: 30S ribosomal protein S18
TA: 30S ribosomal protein S19
UA: 30S ribosomal protein S20
VA: 30S ribosomal protein Thx
WA: 50S ribosomal protein L2
XA: 50S ribosomal protein L3
YA: 50S ribosomal protein L4
ZA: 50S ribosomal protein L5
AB: 50S ribosomal protein L6
BB: 50S ribosomal protein L9
CB: 50S ribosomal protein L11
DB: 50S ribosomal protein L13
EB: 50S ribosomal protein L14
FB: 50S ribosomal protein L15
GB: 50S ribosomal protein L16
HB: 50S ribosomal protein L17
IB: 50S ribosomal protein L18
JB: 50S ribosomal protein L19
KB: 50S ribosomal protein L20
LB: 50S ribosomal protein L21
MB: 50S ribosomal protein L22
NB: 50S ribosomal protein L23
OB: 50S ribosomal protein L24
PB: 50S ribosomal protein L25
QB: 50S ribosomal protein L27
RB: 50S ribosomal protein L28
SB: 50S ribosomal protein L29
TB: 50S ribosomal protein L30
UB: 50S ribosomal protein L32
VB: 50S ribosomal protein L33
WB: 50S ribosomal protein L34
XB: 50S ribosomal protein L35
YB: 30S ribosomal protein S2
ZB: 30S ribosomal protein S3
AC: 30S ribosomal protein S4
BC: 30S ribosomal protein S5
CC: 30S ribosomal protein S6
DC: 30S ribosomal protein S7
EC: 30S ribosomal protein S8
FC: 30S ribosomal protein S9
GC: 30S ribosomal protein S10
HC: 30S ribosomal protein S11
IC: 30S ribosomal protein S12
JC: 30S ribosomal protein S13
KC: 30S ribosomal protein S14
LC: 30S ribosomal protein S15
MC: 30S ribosomal protein S16
NC: 30S ribosomal protein S17
OC: 30S ribosomal protein S18
PC: 30S ribosomal protein S19
QC: 30S ribosomal protein S20
RC: 30S ribosomal protein Thx
SC: 50S ribosomal protein L31
TC: 50S ribosomal protein L31
UC: 16S ribosomal RNA
VC: 23S ribosomal RNA
WC: 5S ribosomal RNA
XC: tRNA
YC: 16S ribosomal RNA
ZC: 23S ribosomal RNA
AD: 5S ribosomal RNA
BD: tRNA
ED: tRNA
FD: tRNA
GD: mRNA
HD: mRNA
hetero molecules


Theoretical massNumber of molelcules
Total (without water)4,505,4632332
Polymers4,451,293110
Non-polymers54,1702222
Water0
1
A: 50S ribosomal protein L2
B: 50S ribosomal protein L3
C: 50S ribosomal protein L4
D: 50S ribosomal protein L5
E: 50S ribosomal protein L6
F: 50S ribosomal protein L9
G: 50S ribosomal protein L11
H: 50S ribosomal protein L13
I: 50S ribosomal protein L14
J: 50S ribosomal protein L15
K: 50S ribosomal protein L16
L: 50S ribosomal protein L17
M: 50S ribosomal protein L18
N: 50S ribosomal protein L19
O: 50S ribosomal protein L20
P: 50S ribosomal protein L21
Q: 50S ribosomal protein L22
R: 50S ribosomal protein L23
S: 50S ribosomal protein L24
T: 50S ribosomal protein L25
U: 50S ribosomal protein L27
V: 50S ribosomal protein L28
W: 50S ribosomal protein L29
X: 50S ribosomal protein L30
Y: 50S ribosomal protein L32
Z: 50S ribosomal protein L33
AA: 50S ribosomal protein L34
BA: 50S ribosomal protein L35
CA: 30S ribosomal protein S2
DA: 30S ribosomal protein S3
EA: 30S ribosomal protein S4
FA: 30S ribosomal protein S5
GA: 30S ribosomal protein S6
HA: 30S ribosomal protein S7
IA: 30S ribosomal protein S8
JA: 30S ribosomal protein S9
KA: 30S ribosomal protein S10
LA: 30S ribosomal protein S11
MA: 30S ribosomal protein S12
NA: 30S ribosomal protein S13
OA: 30S ribosomal protein S14
PA: 30S ribosomal protein S15
QA: 30S ribosomal protein S16
RA: 30S ribosomal protein S17
SA: 30S ribosomal protein S18
TA: 30S ribosomal protein S19
UA: 30S ribosomal protein S20
VA: 30S ribosomal protein Thx
SC: 50S ribosomal protein L31
UC: 16S ribosomal RNA
VC: 23S ribosomal RNA
WC: 5S ribosomal RNA
XC: tRNA
ED: tRNA
GD: mRNA
hetero molecules


Theoretical massNumber of molelcules
Total (without water)2,251,7591126
Polymers2,225,64655
Non-polymers26,1131071
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
2
WA: 50S ribosomal protein L2
XA: 50S ribosomal protein L3
YA: 50S ribosomal protein L4
ZA: 50S ribosomal protein L5
AB: 50S ribosomal protein L6
BB: 50S ribosomal protein L9
CB: 50S ribosomal protein L11
DB: 50S ribosomal protein L13
EB: 50S ribosomal protein L14
FB: 50S ribosomal protein L15
GB: 50S ribosomal protein L16
HB: 50S ribosomal protein L17
IB: 50S ribosomal protein L18
JB: 50S ribosomal protein L19
KB: 50S ribosomal protein L20
LB: 50S ribosomal protein L21
MB: 50S ribosomal protein L22
NB: 50S ribosomal protein L23
OB: 50S ribosomal protein L24
PB: 50S ribosomal protein L25
QB: 50S ribosomal protein L27
RB: 50S ribosomal protein L28
SB: 50S ribosomal protein L29
TB: 50S ribosomal protein L30
UB: 50S ribosomal protein L32
VB: 50S ribosomal protein L33
WB: 50S ribosomal protein L34
XB: 50S ribosomal protein L35
YB: 30S ribosomal protein S2
ZB: 30S ribosomal protein S3
AC: 30S ribosomal protein S4
BC: 30S ribosomal protein S5
CC: 30S ribosomal protein S6
DC: 30S ribosomal protein S7
EC: 30S ribosomal protein S8
FC: 30S ribosomal protein S9
GC: 30S ribosomal protein S10
HC: 30S ribosomal protein S11
IC: 30S ribosomal protein S12
JC: 30S ribosomal protein S13
KC: 30S ribosomal protein S14
LC: 30S ribosomal protein S15
MC: 30S ribosomal protein S16
NC: 30S ribosomal protein S17
OC: 30S ribosomal protein S18
PC: 30S ribosomal protein S19
QC: 30S ribosomal protein S20
RC: 30S ribosomal protein Thx
TC: 50S ribosomal protein L31
YC: 16S ribosomal RNA
ZC: 23S ribosomal RNA
AD: 5S ribosomal RNA
BD: tRNA
FD: tRNA
HD: mRNA
hetero molecules


Theoretical massNumber of molelcules
Total (without water)2,253,7041206
Polymers2,225,64655
Non-polymers28,0571151
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Unit cell
Length a, b, c (Å)211.980, 453.750, 620.720
Angle α, β, γ (deg.)90.000, 90.000, 90.000
Int Tables number19
Space group name H-MP212121

-
Components

+
50S ribosomal protein ... , 29 types, 58 molecules AWABXACYADZAEABFBBGCBHDBIEBJFBKGBLHBMIBNJBOKB...

#1: Protein 50S ribosomal protein L2 /


Mass: 29828.604 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72I07, UniProt: P60405*PLUS
#2: Protein 50S ribosomal protein L3 /


Mass: 22450.213 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72I04, UniProt: Q5SHN8*PLUS
#3: Protein 50S ribosomal protein L4 /


Mass: 22744.279 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72I05, UniProt: Q5SHN9*PLUS
#4: Protein 50S ribosomal protein L5 /


Mass: 21075.623 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72I16, UniProt: Q5SHQ0*PLUS
#5: Protein 50S ribosomal protein L6 /


Mass: 19568.926 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72I19, UniProt: P0DOY8*PLUS
#6: Protein 50S ribosomal protein L9 /


Mass: 16436.205 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72GV5, UniProt: Q5SLQ1*PLUS
#7: Protein 50S ribosomal protein L11 /


Mass: 15526.111 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62442, UniProt: Q5SLP6*PLUS
#8: Protein 50S ribosomal protein L13 /


Mass: 15927.903 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72IN1, UniProt: P60488*PLUS
#9: Protein 50S ribosomal protein L14 /


Mass: 13309.586 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72I14, UniProt: Q5SHP8*PLUS
#10: Protein 50S ribosomal protein L15 /


Mass: 16319.142 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72I23, UniProt: Q5SHQ7*PLUS
#11: Protein 50S ribosomal protein L16 /


Mass: 15977.909 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72I11, UniProt: P60489*PLUS
#12: Protein 50S ribosomal protein L17 /


Mass: 13750.148 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72I33, UniProt: Q9Z9H5*PLUS
#13: Protein 50S ribosomal protein L18 /


Mass: 12639.845 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72I20, UniProt: Q5SHQ4*PLUS
#14: Protein 50S ribosomal protein L19 /


Mass: 17217.867 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72JU9, UniProt: P60490*PLUS
#15: Protein 50S ribosomal protein L20 /


Mass: 13779.275 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72L76, UniProt: P60491*PLUS
#16: Protein 50S ribosomal protein L21 /


Mass: 11069.153 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72HR2, UniProt: P60492*PLUS
#17: Protein 50S ribosomal protein L22 /


Mass: 12808.055 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72I09, UniProt: Q5SHP3*PLUS
#18: Protein 50S ribosomal protein L23 /


Mass: 10759.808 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72I06, UniProt: Q5SHP0*PLUS
#19: Protein 50S ribosomal protein L24 /


Mass: 12085.611 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72I15, UniProt: Q5SHP9*PLUS
#20: Protein 50S ribosomal protein L25 /


Mass: 23238.572 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72IA7, UniProt: Q5SHZ1*PLUS
#21: Protein 50S ribosomal protein L27 /


Mass: 9501.061 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72HR3, UniProt: P60493*PLUS
#22: Protein 50S ribosomal protein L28 /


Mass: 11032.174 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72G84, UniProt: P60494*PLUS
#23: Protein 50S ribosomal protein L29 /


Mass: 8670.258 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72I12, UniProt: Q5SHP6*PLUS
#24: Protein 50S ribosomal protein L30 /


Mass: 6799.126 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72I22, UniProt: Q5SHQ6*PLUS
#25: Protein 50S ribosomal protein L32 /


Mass: 6734.104 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62652, UniProt: P80339*PLUS
#26: Protein 50S ribosomal protein L33 /


Mass: 6632.896 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72GW3, UniProt: P35871*PLUS
#27: Protein/peptide 50S ribosomal protein L34 /


Mass: 6132.449 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579 / References: UniProt: P80340
#28: Protein 50S ribosomal protein L35 /


Mass: 7506.178 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72L77, UniProt: Q5SKU1*PLUS
#49: Protein 50S ribosomal protein L31 /


Mass: 8300.543 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: Q72JR0, UniProt: Q5SJE1*PLUS

-
30S ribosomal protein ... , 20 types, 40 molecules CAYBDAZBEAACFABCGACCHADCIAECJAFCKAGCLAHCMAICNAJCOAKCPALCQAMC...

#29: Protein 30S ribosomal protein S2 /


Mass: 29317.703 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62662, UniProt: P80371*PLUS
#30: Protein 30S ribosomal protein S3 /


Mass: 26751.076 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62663, UniProt: P80372*PLUS
#31: Protein 30S ribosomal protein S4 /


Mass: 24373.447 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62664, UniProt: P80373*PLUS
#32: Protein 30S ribosomal protein S5 /


Mass: 17583.416 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62665, UniProt: Q5SHQ5*PLUS
#33: Protein 30S ribosomal protein S6 /


Mass: 11988.753 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62666, UniProt: Q5SLP8*PLUS
#34: Protein 30S ribosomal protein S7 /


Mass: 18050.973 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62667, UniProt: P17291*PLUS
#35: Protein 30S ribosomal protein S8 /


Mass: 15868.570 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62668, UniProt: P0DOY9*PLUS
#36: Protein 30S ribosomal protein S9 /


Mass: 14429.661 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62669, UniProt: P80374*PLUS
#37: Protein 30S ribosomal protein S10 /


Mass: 11954.968 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62653, UniProt: Q5SHN7*PLUS
#38: Protein 30S ribosomal protein S11 /


Mass: 13737.868 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62654, UniProt: P80376*PLUS
#39: Protein 30S ribosomal protein S12 /


Mass: 14637.384 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P61941, UniProt: Q5SHN3*PLUS
#40: Protein 30S ribosomal protein S13 /


Mass: 14338.861 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62655, UniProt: P80377*PLUS
#41: Protein 30S ribosomal protein S14 /


Mass: 7158.725 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62656, UniProt: P0DOY6*PLUS
#42: Protein 30S ribosomal protein S15 /


Mass: 10578.407 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62657, UniProt: Q5SJ76*PLUS
#43: Protein 30S ribosomal protein S16 /


Mass: 10409.983 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62238, UniProt: Q5SJH3*PLUS
#44: Protein 30S ribosomal protein S17 /


Mass: 12324.670 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62658, UniProt: P0DOY7*PLUS
#45: Protein 30S ribosomal protein S18 /


Mass: 10258.299 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62659, UniProt: Q5SLQ0*PLUS
#46: Protein 30S ribosomal protein S19 /


Mass: 10605.464 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62660, UniProt: Q5SHP2*PLUS
#47: Protein 30S ribosomal protein S20 /


Mass: 11722.116 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62661, UniProt: P80380*PLUS
#48: Protein/peptide 30S ribosomal protein Thx / Ribosome


Mass: 3350.030 Da / Num. of mol.: 2 / Source method: isolated from a natural source
Source: (natural) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (bacteria)
Strain: HB27 / ATCC BAA-163 / DSM 7039 / References: UniProt: P62613, UniProt: Q5SIH3*PLUS

-
RNA chain , 5 types, 12 molecules UCYCVCZCWCADXCBDEDFDGDHD

#50: RNA chain 16S ribosomal RNA /


Mass: 490001.062 Da / Num. of mol.: 2 / Fragment: GB residues 1311714-1310206 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus HB27 (bacteria) / References: GenBank: 46197919
#51: RNA chain 23S ribosomal RNA /


Mass: 940743.812 Da / Num. of mol.: 2 / Fragment: GB residues 1534490-1537382 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus HB27 (bacteria) / References: GenBank: 46197919
#52: RNA chain 5S ribosomal RNA /


Mass: 39211.414 Da / Num. of mol.: 2 / Fragment: GB residues 1537461-1537581 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus HB27 (bacteria) / References: GenBank: 46197919
#53: RNA chain
tRNA / Transfer RNA


Mass: 24802.785 Da / Num. of mol.: 4 / Fragment: GB residues 3822935-3823011 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (E. coli) / References: GenBank: 899721066
#54: RNA chain mRNA / Messenger RNA


Mass: 8822.432 Da / Num. of mol.: 2 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others)

-
Non-polymers , 2 types, 2222 molecules

#55: Chemical...
ChemComp-MG / MAGNESIUM ION


Mass: 24.305 Da / Num. of mol.: 2218 / Source method: obtained synthetically / Formula: Mg
#56: Chemical
ChemComp-ZN / ZINC ION


Mass: 65.409 Da / Num. of mol.: 4 / Source method: obtained synthetically / Formula: Zn

-
Experimental details

-
Experiment

ExperimentMethod: X-RAY DIFFRACTION

-
Sample preparation

CrystalDensity Matthews: 3.35 Å3/Da / Density % sol: 63.32 %
Crystal growTemperature: 289 K / Method: vapor diffusion, hanging drop / pH: 7.5
Details: 3.1 uL 70S*mRNA*tRNAfMet complex + 3.1 uL crystallization buffer (0.1 M Tris-HCl, pH 7.5, 4% v/v PEG20000, 8% v/v MPD, 0.2 M potassium thiocyanate), reservoir: 300 uL 0.5-0.7 M sodium ...Details: 3.1 uL 70S*mRNA*tRNAfMet complex + 3.1 uL crystallization buffer (0.1 M Tris-HCl, pH 7.5, 4% v/v PEG20000, 8% v/v MPD, 0.2 M potassium thiocyanate), reservoir: 300 uL 0.5-0.7 M sodium chloride, 3-fold molar excess of E. coli release factor 1 and 650 uM blasticidin S added during complex formation to stabilize the complex

-
Data collection

DiffractionMean temperature: 100 K
Diffraction sourceSource: SYNCHROTRON / Site: APS / Beamline: 23-ID-B / Wavelength: 1.033 Å
DetectorType: MARMOSAIC 300 mm CCD / Detector: CCD / Date: Nov 30, 2013
RadiationMonochromator: double crystal Si(111) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 1.033 Å / Relative weight: 1
ReflectionResolution: 3.63→60 Å / Num. obs: 661200 / % possible obs: 99.3 % / Redundancy: 10.5 % / Net I/σ(I): 5.7

-
Processing

Software
NameVersionClassification
PHENIXrefinement
XSCALEdata scaling
XDSdata reduction
Blu-Icedata collection
PHENIX1.9-1692phasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: PDB entry 4V9Q

4v9q


Resolution: 3.63→60 Å / Cross valid method: FREE R-VALUE
RfactorNum. reflection% reflection
Rfree0.287 6612 -
Rwork0.268 --
obs-661197 99.3 %
Displacement parametersBiso max: 138.73 Å2 / Biso mean: 102.7818 Å2 / Biso min: 76.15 Å2
Refinement stepCycle: final / Resolution: 3.63→60 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms92746 200666 0 0 293412
Num. residues----271
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
10.1563-0.06490.03970.46780.14880.4810.0016-0.0426-0.0330.04240.0985-0.06130.0481-0.1737-0.1110.7099-0.0754-0.06941.12380.00690.7759-17.082135.1152167.9003
20.3180.02560.15160.3325-0.00180.4694-0.0422-0.05170.073-0.03970.00480.07810.008-0.11260.04710.56010.0217-0.05580.67780.04710.7461-74.6277-57.176921.4443
30.9391-0.219-0.26931.3824-0.25411.3414-0.07170.82030.1635-0.87210.48091.8287-0.3523-0.9727-0.42852.59780.2634-0.49092.60180.48742.6742-53.5244194.214988.4102
40.05580.08050.06940.17330.09350.10761.32410.45150.2183-0.5807-0.07740.88540.1347-0.0649-0.69473.54-0.71370.37217.73650.5195.0183-93.523264.7297166.6141
50.27070.1302-0.16730.95620.44510.99220.1744-0.42480.53151.2526-0.62991.2183-0.7378-1.42170.51943.0540.43220.4942.1015-0.50942.8839-105.033821.892583.8642
60.0099-0.0016-0.00950.38030.18190.0740.2654-0.56552.0188-0.3762-0.65450.5214-1.5455-0.4160.41023.1294-0.36580.24443.6148-0.23645.1556-152.4415-48.0091-47.9791
71.12880.02240.01310.31420.11710.00870.1389-0.2653-0.2126-0.3628-0.17280.62220.0228-0.36370.01041.5948-0.0305-0.63352.1689-0.24041.9437-97.2843101.739571.1468
80.72440.1230.16240.0501-0.05620.1163-0.1135-0.0660.0989-0.09110.04460.2742-0.4218-0.50180.08561.76940.7024-0.5671.89980.09332.3609-149.002245.4611-6.6632
90.1821-0.06870.01530.41690.08470.31490.09290.1591-0.1318-0.2215-0.03870.0050.1087-0.0375-0.06921.243-0.1603-0.12951.2912-0.16251.0082-14.013168.136695.6005
100.4478-0.1369-0.01530.72860.0310.51-0.09220.2950.3808-0.6553-0.0201-0.0087-0.40880.02230.1191.7531-0.1975-0.43051.01190.42671.4164-68.486316.7693-43.236
110.4516-0.076-0.11270.712-0.05230.73710.00480.35310.1712-0.14680.2833-0.1140.02470.031-0.2150.9608-0.06330.11871.1504-0.03320.67141.2784144.2793113.9668
120.7642-0.0633-0.51450.8408-0.05470.2521-0.1645-0.2691-0.19310.3621-0.1591-0.12130.2628-0.14110.19831.4728-0.0654-0.31471.330.08980.8073-10.767472.3839194.4882
130.69010.2756-0.17341.12530.81290.67820.06110.15520.33050.1542-0.0631-0.1055-0.1516-0.3714-0.09451.02430.2501-0.17910.9487-0.11110.8896-19.6625184.7764207.0179
140.39240.19120.03651.40350.17830.98430.1416-0.59450.1649-0.40610.16920.64970.3345-0.2011-0.30561.1064-0.0542-0.1732.69950.00271.7232-121.3115144.3463130.2249
150.7207-0.12020.41051.1355-0.20440.2445-0.2332-0.4869-0.11450.27070.55531.11980.5245-0.4189-0.13332.3752-0.54360.51831.82080.31991.9926-65.935856.1444197.6628
16-0.0149-0.0113-0.02550.26470.0599-0.0039-0.10260.22630.2449-0.4056-0.37220.07570.3589-0.1870.53582.2526-0.05950.27260.89710.16221.80492.0027220.765399.8798
170.139-0.2608-0.31140.61650.3550.6232-0.16230.1995-0.19090.26320.1570.09340.38530.0079-0.10661.4094-0.26470.0831.40780.12710.7989-42.399592.9227218.5677
181.0286-0.34010.2621.54070.26550.99220.3690.1397-0.130.3054-0.1091-0.05740.3049-0.2042-0.20311.382-0.0712-0.34751.1906-0.24850.8534-16.86766.0837151.098
190.12760.28180.27240.59490.47710.34110.1574-0.44160.3021-0.1309-0.32460.1559-0.3194-0.30320.29311.35290.2528-0.10421.5583-0.12861.1718-48.0276187.0602182.6981
200.4996-0.05920.21551.21680.02170.69680.0501-0.1196-0.39830.27190.0198-0.41920.1737-0.4240.06061.1582-0.4064-0.07752.46970.01951.7921-82.5778107.0207168.6192
211.43680.0426-0.0951.83750.4111.7783-0.3139-0.18620.27240.07150.0147-0.12540.3972-0.08760.29021.14620.2128-0.29570.8133-0.19160.945928.565389.0056186.364
221.2340.41930.42160.3513-0.26180.98690.0218-0.1115-0.0530.063-0.23490.2442-0.1621-0.22390.19471.0960.34890.10152.9918-0.24331.9855-116.9583170.4768164.8416
231.47140.1352-0.71881.39510.16972.0150.0561-0.43440.09020.11870.42-0.3360.23680.782-0.37761.22020.113-0.27440.7442-0.21641.12798.841956.3539162.9518
240.69860.2289-0.04561.0367-0.32270.99410.23330.1317-0.04950.43590.19290.33440.201-0.0291-0.29731.019-0.05690.06041.9475-0.07310.7734-41.9073124.4247222.5255
250.3240.2208-0.00110.6185-0.1871.48640.3138-0.08190.06770.4545-0.16230.38220.08940.1947-0.07591.40430.02870.09951.394-0.23680.7922-46.0312134.434235.8882
261.17710.14380.48641.71020.07392.7837-0.0186-0.5667-0.01510.41550.3469-0.1937-0.0120.0574-0.49480.9020.2118-0.26170.7385-0.12980.910311.3581121.3261209.3176
271.1283-0.1338-0.36361.75530.21951.95280.2111-0.4180.0678-0.14230.1672-0.69730.02730.0448-0.37980.715-0.199-0.10521.6607-0.31891.549145.2383152.3227171.7175
282.6076-0.5395-0.25733.06820.12212.2838-0.11130.7531-0.54130.0998-0.0939-0.30730.44870.70490.24031.25180.2519-0.22351.5021-0.34241.031826.203172.4194216.3983
290.8709-0.05810.07571.03680.58851.10270.25920.305-0.5311-0.2649-0.06570.5050.0276-0.2228-0.09691.3508-0.38540.16532.5170.27611.9983-107.803106.9057179.7643
301.92760.10830.19911.3294-0.13951.26870.1366-0.0721-0.48650.2005-0.24490.4773-0.3231-0.53520.210.9080.0762-0.01542.7533-0.04221.2443-87.345155.8101174.6728
311.97610.6475-0.25531.8562-0.3431.39320.0342-0.0423-0.3268-0.3925-0.084-0.3045-0.58380.16490.04811.30770.01170.13420.88210.07670.6247-8.6564182.4379134.4949
321.1027-0.19150.12141.46110.02521.6528-0.1157-0.1950.39180.1783-0.1881-0.7101-0.09330.4370.03990.8524-0.2417-0.00881.3768-0.62981.655347.0194173.5141182.1723
332.2602-0.535-0.2232.62170.13212.9006-0.2862-0.07840.1108-0.0317-0.48260.54270.3116-0.12640.68360.998-0.26950.1441.5944-0.00221.0033-74.1145138.6459210.8966
343.7389-1.08861.25841.9782-0.07311.95240.143-0.26030.09170.20540.055-0.46890.20720.5244-0.3821.23390.0863-0.05231.2663-0.1410.52357.4066106.5401204.272
350.6006-0.71820.05511.3805-0.2640.0796-0.0603-0.51030.34520.4762-0.02040.1031-0.44430.02510.11153.08310.1788-0.14123.2443-1.2483.3856-77.9142176.4166143.1423
360.69910.3435-0.07512.81350.84430.82780.3276-0.078-0.2892-0.09150.0016-0.56630.1632-0.09-0.23420.6172-0.0640.04361.039-0.27421.08759.8526152.7304162.2665
372.62-0.821-1.10792.547-0.70570.9692-0.0837-0.0098-0.1206-0.1927-0.02230.7994-0.4335-0.15340.12691.01760.4886-0.09531.8552-0.08381.2625-57.3972173.241169.1108
380.24020.19810.27840.7662-0.00260.7112-0.0508-0.19550.1682-0.64570.00770.2735-0.3569-0.142-0.09632.31140.0506-0.30071.93010.05131.0739-40.399795.303126.6088
390.3592-0.1382-0.19860.42480.00730.40370.34030.1905-0.4108-0.1047-0.21020.26170.3868-0.3399-0.13711.51820.0373-0.53221.6195-0.27971.7567-89.992474.927355.3665
401.07110.17650.03050.90750.04930.66410.1336-0.0829-0.2043-0.205-0.1720.23980.2288-0.19060.22181.5284-0.309-0.34441.1046-0.34351.3592-42.922433.449667.6427
411.6653-0.6537-0.01091.15740.24470.4373-0.1366-0.20.2298-0.56990.07190.2636-0.1331-0.58540.22121.51890.0841-0.37971.607-0.14290.8955-37.77569.842856.0838
421.437-0.0931-0.3242.39690.49831.6777-0.2750.13950.3694-0.2693-0.0068-0.4381-0.460.13290.07971.5327-0.11550.38711.2946-0.05031.46692.7558149.746271.5934
430.47590.495-0.14560.87980.35680.7148-0.2604-0.0234-0.0521-0.3501-0.09550.643-0.4758-0.16630.37111.56220.3194-0.56721.8267-0.21071.8826-83.5898143.517868.7985
440.8895-0.50670.36861.3805-0.27471.3829-0.03830.16870.0931-0.6574-0.0627-0.11160.31840.38530.15922.3333-0.2580.12271.0603-0.25260.9466-6.22476.658551.8648
450.30150.2661-0.13430.49120.00240.07660.25710.2097-0.0623-0.67220.22520.5617-0.327-0.5752-0.31922.47750.5587-1.08152.27050.17372.6863-103.4272128.517548.7467
461.2949-0.07680.89660.68290.07941.4705-0.29380.03260.2096-0.1672-0.1530.0038-0.0190.34690.37241.97170.32-0.85772.4551-0.48072.0194-112.15593.442846.0954
472.0081-0.43340.00241.06680.03271.70620.350.17010.2068-0.3627-0.1766-0.1137-0.407-0.1912-0.09591.52040.0287-0.27681.25710.12211.0009-41.8286153.670776.946
480.56070.0845-0.55210.272-0.32540.8636-0.0438-0.2063-0.01640.0652-0.2309-0.0083-0.1505-0.55390.31231.235-0.14-0.08381.8644-0.18891.0042-41.772665.4699102.6224
490.47920.261-0.04910.1842-0.14640.41330.1867-0.428-0.0797-0.0278-0.01130.31150.0748-0.0848-0.13130.95330.0239-0.3872.2688-0.29792.6246-118.0943126.447101.3112
502.16330.0682-0.42550.84990.14771.8595-0.1609-0.0817-0.1074-0.1949-0.01980.3758-0.153-0.25350.25481.530.2606-0.88922.2242-0.12021.8439-103.92185.886671.654
511.4144-0.2768-0.31621.71620.45871.2716-0.079-0.60110.2625-0.5993-0.3602-0.50630.02440.28660.33681.4173-0.42030.33581.2889-0.03561.377216.307109.942775.7853
522.58120.84670.6011.2719-0.13281.1547-0.19570.2424-0.1182-0.2883-0.25440.06020.3606-0.0640.23611.3117-0.0402-0.04431.1633-0.31741.02110.626224.668589.1075
531.1886-0.11080.31240.2282-0.04650.2338-0.06540.0405-0.2659-0.11290.1859-0.5562-0.08590.3251-0.15641.1352-0.0939-0.02640.9038-0.12951.324217.054575.745489.009
540.05580.03810.19680.85570.02460.832-0.08510.3249-0.0117-0.6495-0.0110.1225-0.17-0.26610.10882.19780.11930.1721.30080.11131.1463-15.6443141.283959.7878
550.0817-0.02440.0870.0054-0.04230.0707-0.2742-0.41290.01070.194-0.01030.2553-0.14790.39110.28941.2708-0.4147-0.04122.8273-0.50112.5606-121.922492.2466108.1308
562.21140.6753-0.17571.0089-0.08491.0972-0.09010.17480.0669-0.0143-0.0445-0.4761-0.00270.2070.18361.54720.2059-0.47751.3983-0.28271.381332.659646.0648121.323
572.6293-1.6049-1.4011.9369-0.25412.0454-0.1150.15890.1375-0.4096-0.12280.6271-0.2003-0.190.2421.79350.1989-0.64142.5727-0.16772.3839-116.6231119.49879.767
580.69670.0675-0.09410.81250.36920.7784-0.1013-0.03540.424-0.0469-0.13490.0653-0.17320.07440.11430.6821-0.0037-0.18580.4681-0.01060.9584-52.4504-5.044232.4087
590.69410.4468-0.05360.82910.20861.2709-0.02220.0039-0.271-0.15040.0656-0.10920.35310.1868-0.14710.90410.0665-0.02730.7993-0.14340.743-71.2005-81.5115-42.416
600.85230.09990.14461.393-0.65221.12920.11980.0037-0.06980.3360.09670.11230.1596-0.0799-0.36050.7091-0.0441-0.12360.6590.05440.8092-79.2291-97.998869.6691
610.69130.01780.03090.92320.01440.8937-0.0238-0.2295-0.0813-0.1575-0.0470.4563-0.247-0.63380.27260.96630.1114-0.1381.8431-0.17711.7406-175.8489-12.909234.205
621.5180.90370.1182.1390.16420.8733-0.2748-0.10530.247-0.5533-0.09210.2032-0.4571-0.20430.54341.115-0.0056-0.28650.86820.03340.9963-126.718-80.2482-57.6941
630.14640.46660.40871.51451.38231.5448-0.0253-0.76010.17990.28040.103-0.0013-0.14890.5868-0.07081.4115-0.06040.0661.7081-0.05440.9696-47.97428.058108.3495
640.68480.5548-0.07430.51540.25960.6640.02240.15020.19420.3356-0.1685-0.08430.04610.12570.07311.2012-0.1254-0.33320.6465-0.10620.9535-104.0678-104.2109-22.2491
651.3777-0.3998-0.07061.94520.67531.86170.03580.10210.1857-1.03530.19610.275-0.35640.3039-0.02231.0905-0.1552-0.15750.95080.3710.8094-74.4037-37.5843-46.8495
660.48020.0289-0.40150.12440.09810.84740.3175-0.6461-0.0460.26640.0480.14530.0911-0.8072-0.34921.0074-0.17520.10691.5660.17781.0307-105.6463-71.969573.3454
671.92390.0211.23471.16330.5592.2754-0.0541-0.40480.1444-0.4080.10020.3668-0.094-0.3507-0.18481.18310.0458-0.3432.11310.2331.5917-140.4752-52.2722-5.3777
681.48290.3131-0.2271.7832-0.16731.5908-0.0535-0.0711-0.0646-0.54320.1406-0.365-0.23590.8824-0.21870.90880.08570.16841.1942-0.12880.6741-31.1321-76.7785-26.2483
691.08320.0146-0.10990.78440.01640.6908-0.064-0.37210.3660.2461-0.14250.3910.2534-0.22550.18130.84820.09640.20142.6909-0.05211.95-173.4516-48.793158.8345
701.26930.34620.10212.15250.34071.1478-0.0579-0.2333-0.125-0.51040.0165-0.44160.00080.3184-0.15021.3343-0.22140.10071.23050.33830.6967-49.7374-50.7476-57.5448
711.00180.32090.60740.86890.48551.01850.17840.0167-0.2139-0.1375-0.0236-0.27560.0649-0.1703-0.21820.8299-0.2668-0.16870.6410.08260.8588-103.3239-109.49249.0541
720.82670.53360.6931.65410.61690.90690.0702-0.0922-0.06490.04270.33580.42430.6404-0.2397-0.33381.105-0.2776-0.25530.79910.18820.9703-108.1897-122.946718.5965
731.3406-0.06370.12381.95380.30551.722-0.0114-0.0837-0.3242-0.1864-0.1370.45350.2540.33470.33440.80290.07950.03130.6952-0.12340.7911-49.3371-99.82515.4537
741.02270.6522-0.02711.99730.31211.5664-0.0760.1774-0.06880.37510.3399-0.5139-0.14240.1578-0.24890.57920.1779-0.08130.9777-0.12051.0803-12.4393-65.93537.2703
752.2512-0.52390.39842.94660.77954.3938-0.10620.06870.409-0.0249-0.6886-0.7866-0.47730.46490.56720.97130.1602-0.16990.7150.05881.0901-34.1685-110.010955.9227
760.7842-0.1950.0821.3857-0.36830.9523-0.01940.00350.2897-0.22540.23010.1341-0.3448-0.6743-0.08571.0912-0.1416-0.31671.823-0.18161.766-166.4055-61.6601-5.4504
771.37060.2935-0.34771.4573-0.04321.1871-0.09320.10890.522-0.10270.09170.50760.0031-0.2716-0.14590.76120.01640.03591.3940.07981.3959-144.835-60.000943.2128
781.7106-0.01970.96281.31880.3331.82030.0925-0.0003-0.15630.37410.348-0.3248-0.09290.5815-0.46390.88810.0792-0.06730.9097-0.31520.9188-63.1351-26.408369.8992
792.2860.1725-0.25873.0337-0.08781.0232-0.06550.16730.10680.04050.1837-0.5674-0.10970.7138-0.15040.4293-0.1006-0.04051.510.38831.1864-11.0315-77.356857.9851
802.2121-0.3879-0.16062.26280.69062.65290.2683-0.1914-0.10870.262-0.07220.03420.3802-0.4833-0.13140.9042-0.3524-0.09121.28620.05050.9148-134.415-96.298424.3548
812.7812-1.1178-1.5362.00530.72761.7919-0.0184-0.2012-0.167-0.44110.1675-0.4490.23170.15950.09561.06610.0859-0.03480.8007-0.19611.0117-53.177-93.9156-9.0392
822.61350.7522-1.4082.1640.20944.63620.0879-0.05040.0373-0.0834-0.15990.06320.6352-0.06680.14642.88560.7594-0.02293.79820.41472.6563-132.9159-30.066364.8819
830.74580.17780.22411.6682-0.9752.19710.12990.17340.46350.04550.0507-0.21920.25880.0835-0.12780.56460.05930.12521.10380.13760.9425-47.0803-54.12238.7449
843.45780.6624-0.57380.78640.94271.89660.12390.09910.2292-0.13480.26130.0273-0.1915-0.7678-0.25680.69640.02480.18541.5984-0.29371.4221-114.2886-57.215660.2672
850.67330.3022-0.21440.61980.30110.5930.1043-0.08820.4731-0.32850.1912-0.2672-0.74220.0865-0.29092.6372-0.0135-0.48691.09370.09823.2684-89.78186.309-13.1547
860.19340.1368-0.11620.31820.13150.21370.07290.47070.3092-0.348-0.05990.5982-0.6816-0.1586-0.08062.18380.5991-0.72521.86060.36562.4128-141.245661.6303-33.1114
870.23570.05240.32620.3191-0.07240.5767-0.09330.67160.6216-0.7248-0.3018-0.0881-0.3711-0.1780.51372.76710.0734-0.49241.4630.49651.6553-96.954147.2792-76.1108
880.7590.1218-0.08181.0856-0.15220.4354-0.317-0.17360.0978-0.31050.24810.4573-0.4272-0.42120.02282.14740.0491-0.7231.16850.5742.288-89.714157.5748-39.5788
891.51740.3178-0.21921.28660.01462.1376-0.2324-0.45950.0914-0.16250.40180.1305-0.25270.3402-0.14941.2112-0.232-0.53261.4276-0.24461.7724-47.909937.043238.5146
901.404-0.09470.17970.87450.10190.65740.05020.0750.34270.36720.3855-0.0119-0.1892-0.5294-0.3821.61140.8166-0.24382.1411-0.34511.7968-134.297745.47934.8366
910.2347-0.1235-0.24611.51750.04320.48540.02730.10260.3879-0.57450.14630.0167-0.1365-0.2507-0.11872.5391-0.6595-0.6910.68730.92351.9319-57.779259.6518-33.6183
920.2296-0.0941-0.33440.0690.22370.60360.16980.2509-0.2091-0.326-0.36360.2947-0.5785-0.29710.42581.91080.7515-0.63121.883-0.25082.5416-153.068667.292720.9661
930.0059-0.0468-0.05850.08050.05420.2268-0.15120.2530.3307-0.3091-0.02190.1702-0.5538-0.23180.20422.9371.0695-1.16651.74650.20953.5813-162.343971.7055-13.7897
942.22850.1008-0.40261.70550.73211.68420.4795-0.14340.1924-0.0193-0.27980.1540.15150.2739-0.16251.27520.4219-0.40611.187-0.34171.419-92.605934.27543.6533
950.31730.53910.20280.86810.39350.2591-0.12630.1069-0.3405-0.40120.13810.3948-0.16880.0143-0.18431.6379-0.1762-0.55280.92860.21471.6411-96.689911.5299-45.2533
960.60370.31220.32790.53990.07750.2142-0.2141-0.73880.02190.26890.35490.2708-0.2734-0.4306-0.0211.34970.6778-0.32762.59630.10692.3122-171.246415.9117.5304
970.33710.0253-0.02540.0809-0.14760.2625-0.4883-0.15090.1759-0.4884-0.40450.4179-0.76420.00770.89131.72840.6129-0.60111.4170.12781.9558-155.976645.9387-22.441
980.7280.1349-0.25841.95450.98252.68680.5078-0.071-0.2274-0.83850.8705-0.1491-0.33760.0118-1.01471.6551-0.3423-0.630.98680.35211.7231-35.803333.3397-1.8
991.35570.3533-0.07740.5480.03560.55190.21730.38810.3716-0.86150.0458-0.1202-0.68430.38030.08523.1223-0.32720.00791.44670.52481.3827-54.746223.7773-86.9176
1001.0479-0.04410.48080.42160.03540.4856-0.87170.5035-0.0943-0.50390.3229-0.4341-0.21410.60820.54851.5538-0.4020.04721.50280.41761.1893-36.863621.2177-36.3958
1010.9475-0.0832-0.48071.4672-0.03481.89290.3867-0.28160.1417-0.2832-0.11330.0277-0.5473-0.2455-0.06571.8953-0.1932-0.43490.9283-0.06211.7541-65.786850.210530.9939
1020.9797-0.3338-0.61110.11760.20770.3729-0.2369-0.27830.3625-0.1179-0.40050.2567-0.2164-0.14440.66021.3680.3975-0.37842.09850.32292.6554-176.245410.5252-16.7753
1032.30160.81560.60631.53170.50171.48110.06270.07560.2936-0.78710.3423-0.5392-0.16070.3382-0.02732.0422-0.24930.4381.5810.24871.7996-24.1438-10.9969-67.5262
1043.04230.9342-2.00252.08490.78922.41110.06180.04070.3317-0.433-0.2780.9469-0.575-0.69670.24041.80470.5122-0.67691.9826-0.57423.058-168.393237.102711.7444
1051.1356-1.463-0.38422.8093-0.78441.9137-0.1497-0.1452-0.2224-0.2557-0.36780.47250.1863-0.22730.41862.4261-0.1895-0.21883.2729-0.66983.0703-132.1641150.7323115.5312
1060.65790.43171.09720.30780.74811.9067-0.0497-0.1990.2963-0.4002-0.31560.958-0.3125-0.64320.36942.9114-0.2196-0.78293.4401-0.06034.0508-185.55762.212241.3861
1070.56920.35980.34040.713-0.14740.5671-0.1527-0.1703-0.23580.08360.31960.7922-0.0904-1.238-0.29041.10950.00660.17573.0009-0.10371.7593-113.7075143.3553171.2385
1080.0092-0.0138-0.0247-0.00610.00970.00040.23350.23570.66280.0958-0.14390.3567-0.2944-0.6918-0.02592.7148-0.2755-0.08683.5628-0.09184.3992-103.996358.0783153.0121
109-0.0092-0.03080.00170.00750.02040.00890.01970.27820.02970.4124-0.1540.47890.307-0.59640.14573.72340.20040.25342.4885-0.37394.11-161.787-33.2771-53.2789
1100.237-0.2613-0.3980.43470.56430.7481-0.3802-0.19690.30610.09230.03260.7972-0.3798-0.29270.42722.4620.3886-0.24593.48830.1752.7453-66.1196162.8894108.3535
1114.27850.78333.68193.2612-1.05764.13920.2209-0.0542-0.987-0.1315-0.07550.2141.0664-0.1449-0.15733.7875-0.2682-0.07143.1428-0.35153.6494-65.8752130.453687.7179
1120.00130.0057-0.00240.05070.00790.0251-0.0191-0.0650.1728-0.1475-0.04670.3241-0.2916-0.12540.08382.8104-0.1055-0.12863.1563-0.49753.6062-56.2337121.138686.3967
1133.88860.0034-0.64443.337-2.18173.1511-0.05330.0418-0.2149-0.2715-0.0810.18470.143-0.19150.09421.20360.3022-0.2461.86290.13321.9443-58.4954107.050591.5178
1141.62.73982.49285.98945.15874.4942-0.20111.6559-2.618-2.58260.2791-5.01831.13372.5428-0.07132.04030.06540.14692.00820.05032.9717-61.008392.444193.9905
1150.5343-0.2689-0.69641.38870.33191.64230.0953-0.5140.2490.61550.32870.4871-0.098-0.2212-0.52391.38240.0403-0.09142.8032-0.26062.1409-71.5633125.8766126.9335
1160.05150.04040.18020.03980.15990.6265-0.1074-0.087-0.039-0.0247-0.09430.15760.0397-0.10660.11551.3338-0.4435-0.3252.14630.09161.8234-68.823110.545691.6842
1170.8014-0.3361-0.71452.152-0.34160.8599-0.1369-0.08190.04250.0051-0.00560.1277-0.00390.09220.14383.40780.4019-0.20773.7111-0.1942.5557-40.6923122.3898154.7717
1180.4558-0.6715-0.36280.59380.31580.47080.07280.0460.11-0.06940.09050.23520.1236-0.3706-0.14910.8804-0.0209-0.17122.0429-0.00051.7886-171.1013-54.269231.4201
1190.20930.2538-0.02850.2692-0.12360.2422-0.2983-0.4250.1346-0.0551-0.38240.48490.1272-0.48930.42712.80330.2956-0.22542.8-0.27123.633-119.25383.449252.7007
1202.2982-1.89711.74862.8249-2.41263.4630.0620.0549-0.3402-0.6996-0.11670.35720.22330.04210.07693.96090.074-0.48264.25970.17574.0287-118.477625.59621.2688
1210.0045-0.00230.03670.02490.04390.5639-0.1467-0.39380.03830.0755-0.08390.2156-0.2069-0.10560.22462.80980.0036-0.45373.335-0.19523.068-108.572326.769511.2198
1220.1136-0.0587-0.33550.04160.19871.2998-0.15380.43060.3203-0.8065-0.13850.4449-0.5313-0.15240.26931.3931-0.0206-0.64131.7749-0.20231.632-111.410522.3835-3.0038
1231.86590.11571.83381.8078-0.92722.8359-0.4232.05771.5108-1.00440.1-2.5248-3.10214.65960.3132.4509-0.1247-0.58862.6828-0.3341.8889-114.35720.6631-17.6421
1240.74940.8426-0.22220.9216-0.3480.586-0.4042-0.2725-0.06810.07360.24260.07730.1115-0.47110.30411.24960.1266-0.20691.90260.39432.4633-126.442-12.503214.9813
1252.48560.9369-1.41832.61081.84633.3304-0.1064-0.0873-0.4693-0.1017-0.1369-0.32370.44190.4650.20042.9522-0.00120.56542.77020.18473.048-97.6419-42.09229.7514
1260.3628-0.0836-0.07960.1195-0.20041.98890.13040.14730.1617-0.4423-0.23060.1808-0.0325-0.02080.13851.40880.4469-0.92471.77190.11122.6239-121.66622.83390.6808
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1(chain VC and not (resid 2094:2190 or resid 1050:1104))V0
2X-RAY DIFFRACTION2(chain ZC and not (resid 2094:2190 or resid 1050:1104))Z0
3X-RAY DIFFRACTION3(chain VC and resi 2094:2190)V0
4X-RAY DIFFRACTION4(chain VC and resi 1050:1104)V0
5X-RAY DIFFRACTION5(chain ZC and resi 2094:2190)Z0
6X-RAY DIFFRACTION6(chain ZC and resi 1050:1104)Z0
7X-RAY DIFFRACTION7(chain UC and resid 925:1391)U0
8X-RAY DIFFRACTION8(chain YC and resid 925:1391)Y0
9X-RAY DIFFRACTION9(chain UC and not resid 925:1391)U0
10X-RAY DIFFRACTION10(chain YC and not resid 925:1391)Y0
11X-RAY DIFFRACTION11(chain A)A0
12X-RAY DIFFRACTION12(chain B)B0
13X-RAY DIFFRACTION13(chain C)C0
14X-RAY DIFFRACTION14(chain D)D0
15X-RAY DIFFRACTION15(chain E)E0
16X-RAY DIFFRACTION16(chain F)F0
17X-RAY DIFFRACTION17(chain H)H0
18X-RAY DIFFRACTION18(chain I)I0
19X-RAY DIFFRACTION19(chain J)J0
20X-RAY DIFFRACTION20(chain K)K0
21X-RAY DIFFRACTION21(chain L)L0
22X-RAY DIFFRACTION22(chain M)M0
23X-RAY DIFFRACTION23(chain N)N0
24X-RAY DIFFRACTION24(chain O)O0
25X-RAY DIFFRACTION25(chain P)P0
26X-RAY DIFFRACTION26(chain Q)Q0
27X-RAY DIFFRACTION27(chain R)R0
28X-RAY DIFFRACTION28(chain S)S0
29X-RAY DIFFRACTION29(chain T)T0
30X-RAY DIFFRACTION30(chain U)U0
31X-RAY DIFFRACTION31(chain V)V0
32X-RAY DIFFRACTION32(chain W)W0
33X-RAY DIFFRACTION33(chain X)X0
34X-RAY DIFFRACTION34(chain Y)Y0
35X-RAY DIFFRACTION35(chain Z)Z0
36X-RAY DIFFRACTION36(chain AA)A0
37X-RAY DIFFRACTION37(chain BA)B0
38X-RAY DIFFRACTION38(chain CA)C0
39X-RAY DIFFRACTION39(chain DA)D0
40X-RAY DIFFRACTION40(chain EA)E0
41X-RAY DIFFRACTION41(chain FA)F0
42X-RAY DIFFRACTION42(chain GA)G0
43X-RAY DIFFRACTION43(chain HA)H0
44X-RAY DIFFRACTION44(chain IA)I0
45X-RAY DIFFRACTION45(chain JA)J0
46X-RAY DIFFRACTION46(chain KA)K0
47X-RAY DIFFRACTION47(chain LA)L0
48X-RAY DIFFRACTION48(chain MA)M0
49X-RAY DIFFRACTION49(chain NA)N0
50X-RAY DIFFRACTION50(chain OA)O0
51X-RAY DIFFRACTION51(chain PA)P0
52X-RAY DIFFRACTION52(chain QA)Q0
53X-RAY DIFFRACTION53(chain RA)R0
54X-RAY DIFFRACTION54(chain SA)S0
55X-RAY DIFFRACTION55(chain TA)T0
56X-RAY DIFFRACTION56(chain UA)U0
57X-RAY DIFFRACTION57(chain VA)V0
58X-RAY DIFFRACTION58(chain WA)W0
59X-RAY DIFFRACTION59(chain XA)X0
60X-RAY DIFFRACTION60(chain YA)Y0
61X-RAY DIFFRACTION61(chain ZA)Z0
62X-RAY DIFFRACTION62(chain AB)A0
63X-RAY DIFFRACTION63(chain BB)B0
64X-RAY DIFFRACTION64(chain DB)D0
65X-RAY DIFFRACTION65(chain EB)E0
66X-RAY DIFFRACTION66(chain FB)F0
67X-RAY DIFFRACTION67(chain GB)G0
68X-RAY DIFFRACTION68(chain HB)H0
69X-RAY DIFFRACTION69(chain IB)I0
70X-RAY DIFFRACTION70(chain JB)J0
71X-RAY DIFFRACTION71(chain KB)K0
72X-RAY DIFFRACTION72(chain LB)L0
73X-RAY DIFFRACTION73(chain MB)M0
74X-RAY DIFFRACTION74(chain NB)N0
75X-RAY DIFFRACTION75(chain OB)O0
76X-RAY DIFFRACTION76(chain PB)P0
77X-RAY DIFFRACTION77(chain QB)Q0
78X-RAY DIFFRACTION78(chain RB)R0
79X-RAY DIFFRACTION79(chain SB)S0
80X-RAY DIFFRACTION80(chain TB)T0
81X-RAY DIFFRACTION81(chain UB)U0
82X-RAY DIFFRACTION82(chain VB)V0
83X-RAY DIFFRACTION83(chain WB)W0
84X-RAY DIFFRACTION84(chain XB)X0
85X-RAY DIFFRACTION85(chain YB)Y0
86X-RAY DIFFRACTION86(chain ZB)Z0
87X-RAY DIFFRACTION87(chain AC)A0
88X-RAY DIFFRACTION88(chain BC)B0
89X-RAY DIFFRACTION89(chain CC)C0
90X-RAY DIFFRACTION90(chain DC)D0
91X-RAY DIFFRACTION91(chain EC)E0
92X-RAY DIFFRACTION92(chain FC)F0
93X-RAY DIFFRACTION93(chain GC)G0
94X-RAY DIFFRACTION94(chain HC)H0
95X-RAY DIFFRACTION95(chain IC)I0
96X-RAY DIFFRACTION96(chain JC)J0
97X-RAY DIFFRACTION97(chain KC)K0
98X-RAY DIFFRACTION98(chain LC)L0
99X-RAY DIFFRACTION99(chain MC)M0
100X-RAY DIFFRACTION100(chain NC)N0
101X-RAY DIFFRACTION101(chain OC)O0
102X-RAY DIFFRACTION102(chain PC)P0
103X-RAY DIFFRACTION103(chain QC)Q0
104X-RAY DIFFRACTION104(chain RC)R0
105X-RAY DIFFRACTION105(chain SC)S0
106X-RAY DIFFRACTION106(chain TC)T0
107X-RAY DIFFRACTION107(chain WC)W0
108X-RAY DIFFRACTION108(chain G)G0
109X-RAY DIFFRACTION109(chain CB)C0
110X-RAY DIFFRACTION110(chain XC and not resid 32:38)X0
111X-RAY DIFFRACTION111(chain XC and resi 32:38)X0
112X-RAY DIFFRACTION112(chain GD and not resid 16:25)G0
113X-RAY DIFFRACTION113(chain GD and resi 16:18)G0
114X-RAY DIFFRACTION114(chain GD and resi 19:20)G0
115X-RAY DIFFRACTION115(chain ED and (resid 1:31 or resid 39:72))E0
116X-RAY DIFFRACTION116(chain ED and resi 32:38)E0
117X-RAY DIFFRACTION117(chain ED and resi 73:76)E0
118X-RAY DIFFRACTION118(chain AD)A0
119X-RAY DIFFRACTION119(chain BD and not resid 32:38)B0
120X-RAY DIFFRACTION120(chain BD and resi 32:38)B0
121X-RAY DIFFRACTION121(chain HD and resid 13:15)H0
122X-RAY DIFFRACTION122(chain HD and resi 16:18)H0
123X-RAY DIFFRACTION123(chain HD and resi 19:20)H0
124X-RAY DIFFRACTION124(chain FD and (resid 1:31 or resid 39:72))F0
125X-RAY DIFFRACTION125(chain FD and resi 73:76)F0
126X-RAY DIFFRACTION126(chain FD and resi 32:38)F0

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

Read more