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- PDB-4dv2: Crystal structure of the Thermus thermophilus 30S ribosomal subun... -

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Basic information

Entry
Database: PDB / ID: 4dv2
TitleCrystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A
Components
  • (ribosomal protein ...) x 20
  • 16S rRNA
KeywordsRIBOSOME / decoding / Streptomycin / RNA structure / antibiotic resistance
Function / homology
Function and homology information


small ribosomal subunit / tRNA binding / rRNA binding / ribosome / structural constituent of ribosome / translation / ribonucleoprotein complex / mRNA binding / zinc ion binding / metal ion binding / cytoplasm
Similarity search - Function
Ribosomal protein S4/S9, N-terminal domain / Ribosomal Protein S4 Delta 41; Chain A, domain 1 / S16 Ribosomal Protein; Chain: A; / Ribosomal protein S16 / Ribosomal protein S18 / 30s Ribosomal Protein S18 / 30s ribosomal protein s13; domain 2 / Ribosomal protein S13/S18, C-terminal domain / Ribosomal protein S20 / 30s Ribosomal Protein S19; Chain A ...Ribosomal protein S4/S9, N-terminal domain / Ribosomal Protein S4 Delta 41; Chain A, domain 1 / S16 Ribosomal Protein; Chain: A; / Ribosomal protein S16 / Ribosomal protein S18 / 30s Ribosomal Protein S18 / 30s ribosomal protein s13; domain 2 / Ribosomal protein S13/S18, C-terminal domain / Ribosomal protein S20 / 30s Ribosomal Protein S19; Chain A / Ribosomal protein S19/S15 / Ribosomal protein S3, C-terminal domain / Ribosomal Protein S14/S29 / 30s Ribosomal Protein S14; Chain N / Ribosomal Protein S8; Chain: A, domain 1 - #30 / RNA-binding S4 domain / Ribosomal Protein S7 / Ribosomal protein S7/S5 / Ribosomal protein S6/Translation elongation factor EF1B / Ribosomal protein S3 C-terminal domain / Helix hairpin bin / Dna Ligase; domain 1 - #10 / Ribosomal protein S11/S14 / Ribosomal protein S10 / Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A / S15/NS1, RNA-binding / K homology (KH) domain / Double Stranded RNA Binding Domain - #20 / Helicase, Ruva Protein; domain 3 - #50 / Glucose-6-phosphate isomerase like protein; domain 1 / Ribosomal Protein S8; Chain: A, domain 1 / Ribosomal Protein S5; domain 2 - #10 / 30S ribosomal protein Thx / 30S ribosomal protein Thx / 30S ribosomal protein / GMP Synthetase; Chain A, domain 3 / Ribosomal Protein S5; domain 2 / Double Stranded RNA Binding Domain / Ribosomal protein S14, type Z / Helicase, Ruva Protein; domain 3 / Nucleic acid-binding proteins / Dna Ligase; domain 1 / Methane Monooxygenase Hydroxylase; Chain G, domain 1 / Ribosomal protein S14/S29 / Ribosomal protein S3, bacterial-type / Ribosomal protein S6, conserved site / Ribosomal protein S6 signature. / Ribosomal protein S19, bacterial-type / Ribosomal protein S7, bacterial/organellar-type / Ribosomal protein S11, bacterial-type / Ribosomal protein S13, bacterial-type / Ribosomal protein S20 / Ribosomal protein S20 superfamily / Ribosomal protein S20 / Ribosomal protein S9, bacterial/plastid / Ribosomal protein S4, bacterial-type / 30S ribosomal protein S17 / Ribosomal protein S5, bacterial-type / Ribosomal protein S6, plastid/chloroplast / Ribosomal protein S2, bacteria/mitochondria/plastid / Ribosomal protein S18, conserved site / Ribosomal protein S18 signature. / Ribosomal protein S16 / Ribosomal protein S16 / Ribosomal protein S16 domain superfamily / Ribosomal protein S15, bacterial-type / Ribosomal protein S6 / Ribosomal protein S6 / Ribosomal protein S6 superfamily / Ribosomal protein S12, bacterial-type / Translation elongation factor EF1B/ribosomal protein S6 / Ribosomal protein S18 / Ribosomal protein S18 / Ribosomal protein S18 superfamily / K Homology domain / K homology RNA-binding domain / Ribosomal protein S3, conserved site / Ribosomal protein S14, conserved site / Ribosomal protein S10, conserved site / : / K Homology domain, type 2 / Ribosomal protein S3, C-terminal / Ribosomal protein S3, C-terminal domain superfamily / Ribosomal protein S15/S19, conserved site / KH domain / Ribosomal protein S19/S15 / Ribosomal protein S19/S15, superfamily / Ribosomal protein S10 / Ribosomal protein S3, C-terminal domain / Few Secondary Structures / Irregular / Ribosomal protein S3 signature. / Ribosomal protein S10 signature. / Ribosomal protein S14 signature. / Ribosomal protein S7, conserved site / K homology domain superfamily, prokaryotic type / Ribosomal protein S17, conserved site / Ribosomal protein S19 / Ribosomal protein S2 signature 1. / Ribosomal protein S2, conserved site
Similarity search - Domain/homology
: / RNA / RNA (> 10) / RNA (> 100) / RNA (> 1000) / Small ribosomal subunit protein uS12 / Small ribosomal subunit protein uS14 / Small ribosomal subunit protein uS17 / Small ribosomal subunit protein uS8 / Small ribosomal subunit protein uS7 ...: / RNA / RNA (> 10) / RNA (> 100) / RNA (> 1000) / Small ribosomal subunit protein uS12 / Small ribosomal subunit protein uS14 / Small ribosomal subunit protein uS17 / Small ribosomal subunit protein uS8 / Small ribosomal subunit protein uS7 / Small ribosomal subunit protein uS2 / Small ribosomal subunit protein uS3 / Small ribosomal subunit protein uS4 / Small ribosomal subunit protein uS9 / Small ribosomal subunit protein uS11 / Small ribosomal subunit protein uS13 / Small ribosomal subunit protein bS20 / Small ribosomal subunit protein uS12 / Small ribosomal subunit protein uS10 / Small ribosomal subunit protein uS19 / 30S ribosomal protein S17 / 30S ribosomal protein S14 type Z / 30S ribosomal protein S8 / Small ribosomal subunit protein uS5 / Small ribosomal subunit protein bTHX / Small ribosomal subunit protein uS15 / Small ribosomal subunit protein bS16 / Small ribosomal subunit protein bS6 / Small ribosomal subunit protein bS18
Similarity search - Component
Biological speciesThermus thermophilus (bacteria)
MethodX-RAY DIFFRACTION / SYNCHROTRON / FOURIER SYNTHESIS / Resolution: 3.646 Å
AuthorsDemirci, H. / Murphy IV, F. / Murphy, E. / Gregory, S.T. / Dahlberg, A.E. / Jogl, G.
CitationJournal: To be Published
Title: A structural basis for streptomycin resistance
Authors: Demirci, H. / Murphy IV, F. / Murphy, E. / Gregory, S.T. / Dahlberg, A.E. / Jogl, G.
History
DepositionFeb 22, 2012Deposition site: RCSB / Processing site: RCSB
Revision 1.0Feb 27, 2013Provider: repository / Type: Initial release

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: 16S rRNA
B: ribosomal protein S2
C: ribosomal protein S3
D: ribosomal protein S4
E: ribosomal protein S5
F: ribosomal protein S6
G: ribosomal protein S7
H: ribosomal protein S8
I: ribosomal protein S9
J: ribosomal protein S10
K: ribosomal protein S11
L: ribosomal protein S12
M: ribosomal protein S13
N: ribosomal protein S14
O: ribosomal protein S15
P: ribosomal protein S16
Q: ribosomal protein S17
R: ribosomal protein S18
S: ribosomal protein S19
T: ribosomal protein S20
U: ribosomal protein THX
hetero molecules


Theoretical massNumber of molelcules
Total (without water)791,115312
Polymers783,96021
Non-polymers7,155291
Water7,494416
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Unit cell
Length a, b, c (Å)403.743, 403.743, 173.221
Angle α, β, γ (deg.)90.000, 90.000, 90.000
Int Tables number92
Space group name H-MP41212

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Components

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RNA chain , 1 types, 1 molecules A

#1: RNA chain 16S rRNA /


Mass: 494194.812 Da / Num. of mol.: 1 / Mutation: C912A / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: GenBank: M26923.1

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Ribosomal protein ... , 20 types, 20 molecules BCDEFGHIJKLMNOPQRSTU

#2: Protein ribosomal protein S2 /


Mass: 29317.703 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: P80371
#3: Protein ribosomal protein S3 /


Mass: 26751.076 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: P80372
#4: Protein ribosomal protein S4 /


Mass: 24373.447 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: P80373
#5: Protein ribosomal protein S5 /


Mass: 17583.416 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SHQ5
#6: Protein ribosomal protein S6 /


Mass: 11988.753 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SLP8
#7: Protein ribosomal protein S7 /


Mass: 18050.973 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: P17291
#8: Protein ribosomal protein S8 /


Mass: 15868.570 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SHQ2, UniProt: P0DOY9*PLUS
#9: Protein ribosomal protein S9 /


Mass: 14410.614 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: P80374
#10: Protein ribosomal protein S10 /


Mass: 11954.968 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SHN7
#11: Protein ribosomal protein S11 /


Mass: 13737.868 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: P80376
#12: Protein ribosomal protein S12 /


Mass: 14966.846 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: F6DEQ7, UniProt: Q5SHN3*PLUS
#13: Protein ribosomal protein S13 /


Mass: 14338.861 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: P80377
#14: Protein ribosomal protein S14 /


Mass: 7158.725 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SHQ1, UniProt: P0DOY6*PLUS
#15: Protein ribosomal protein S15 /


Mass: 10578.407 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SJ76
#16: Protein ribosomal protein S16 /


Mass: 10409.983 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SJH3
#17: Protein ribosomal protein S17 /


Mass: 12324.670 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SHP7, UniProt: P0DOY7*PLUS
#18: Protein ribosomal protein S18 /


Mass: 10258.299 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SLQ0
#19: Protein ribosomal protein S19 / 40S ribosomal protein S19


Mass: 10605.464 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SHP2
#20: Protein ribosomal protein S20 /


Mass: 11736.143 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: P80380
#21: Protein/peptide ribosomal protein THX / Ribosome


Mass: 3350.030 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SIH3

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Non-polymers , 3 types, 707 molecules

#22: Chemical...
ChemComp-MG / MAGNESIUM ION


Mass: 24.305 Da / Num. of mol.: 289 / Source method: obtained synthetically / Formula: Mg
#23: Chemical ChemComp-ZN / ZINC ION


Mass: 65.409 Da / Num. of mol.: 2 / Source method: obtained synthetically / Formula: Zn
#24: Water ChemComp-HOH / water / Water


Mass: 18.015 Da / Num. of mol.: 416 / Source method: isolated from a natural source / Formula: H2O

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 4.5 Å3/Da / Density % sol: 72.68 %
Crystal growTemperature: 277 K / Method: hanging drop / pH: 6.5 / Details: MPD, pH 6.5, HANGING DROP, temperature 277K

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Data collection

DiffractionMean temperature: 100 K
Diffraction sourceSource: SYNCHROTRON / Site: APS / Beamline: 24-ID-E / Wavelength: 0.98 Å
DetectorType: ADSC QUANTUM 315 / Detector: CCD / Date: Apr 19, 2010
RadiationMonochromator: single crystal Si(220) side-bounce / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.98 Å / Relative weight: 1
ReflectionResolution: 3.646→30 Å / Num. all: 153457 / Num. obs: 153457 / % possible obs: 97.2 % / Observed criterion σ(F): -3 / Observed criterion σ(I): -3 / Redundancy: 3.1 % / Rmerge(I) obs: 0.12 / Χ2: 1.681 / Net I/σ(I): 12.2
Reflection shell
Resolution (Å)Redundancy (%)Rmerge(I) obsNum. unique allΧ2Diffraction-ID% possible all
3.646-3.783.10.759152551.369197.5
3.78-3.933.20.539153841.365198.6
3.93-4.113.20.399154421.39199
4.11-4.333.20.279155211.428199
4.33-4.63.20.201154771.54198.9
4.6-4.953.20.146154961.547198.5
4.95-5.443.10.112154261.605197.9
5.44-6.233.10.09152561.652196.4
6.23-7.823.10.092152972.425196
7.82-303.10.084149032.574190.8

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Processing

Software
NameVersionClassificationNB
DENZOdata reduction
SCALEPACKdata scaling
PHENIXdev_978refinement
PDB_EXTRACT3.1data extraction
HKL-2000data collection
PHENIXdev_978phasing
RefinementMethod to determine structure: FOURIER SYNTHESIS / Resolution: 3.646→29.771 Å / Occupancy max: 1 / Occupancy min: 0.25 / FOM work R set: 0.8474 / SU ML: 0.35 / σ(F): 1.34 / Phase error: 22.22 / Stereochemistry target values: ML
RfactorNum. reflection% reflectionSelection details
Rfree0.223 7637 4.98 %FROM PDB ENTRY 2VQE
Rwork0.1645 ---
obs0.1675 153299 96.99 %-
all-153299 --
Solvent computationShrinkage radii: 0.86 Å / VDW probe radii: 1.1 Å / Solvent model: FLAT BULK SOLVENT MODEL / Bsol: 110.176 Å2 / ksol: 0.244 e/Å3
Displacement parametersBiso max: 530.31 Å2 / Biso mean: 173.9463 Å2 / Biso min: 31.94 Å2
Baniso -1Baniso -2Baniso -3
1--9.8508 Å2-0 Å20 Å2
2---9.8508 Å20 Å2
3---16.0687 Å2
Refinement stepCycle: LAST / Resolution: 3.646→29.771 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms19088 32509 291 416 52304
Refine LS restraints
Refine-IDTypeDev idealNumber
X-RAY DIFFRACTIONf_bond_d0.01356357
X-RAY DIFFRACTIONf_angle_d1.5983571
X-RAY DIFFRACTIONf_chiral_restr0.08910413
X-RAY DIFFRACTIONf_plane_restr0.0094888
X-RAY DIFFRACTIONf_dihedral_angle_d20.33626123
LS refinement shell

Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 30

Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkNum. reflection all% reflection obs (%)
3.646-3.68760.3362570.29944479473690
3.6876-3.73090.33562470.27254830507798
3.7309-3.77630.31282870.25214822510998
3.7763-3.8240.30822140.25044906512098
3.824-3.87430.27772700.22994883515399
3.8743-3.92720.2812470.22964900514799
3.9272-3.98320.28632490.21784862511199
3.9832-4.04250.2532770.21024895517299
4.0425-4.10550.26112950.24880517599
4.1055-4.17270.26262330.19254940517399
4.1727-4.24440.26152390.1814926516599
4.2444-4.32140.23462760.17194914519099
4.3214-4.40420.23372560.17154907516399
4.4042-4.49380.22542940.16784872516699
4.4938-4.59120.20912490.15834930517999
4.5912-4.69760.19482300.15354945517599
4.6976-4.81460.21082530.14644913516699
4.8146-4.94420.20252620.13694894515698
4.9442-5.0890.20582580.14164905516398
5.089-5.25240.20832260.13524938516498
5.2524-5.4390.18912530.12534887514098
5.439-5.65540.19592610.12684840510197
5.6554-5.91090.19112500.1314860511097
5.9109-6.21980.22672430.1424824506796
6.2198-6.60550.19912510.1394869512097
6.6055-7.10910.19252500.13134870512096
7.1091-7.81280.19192480.12364824507295
7.8128-8.91670.1882590.13454778503794
8.9167-11.13540.20062490.14594783503293
11.1354-29.77160.24622540.21234586484086
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
10.75240.1096-0.22810.9434-0.10550.6883-0.0142-0.1233-0.26530.26530.04310.25160.29080.0547-0.0260.91570.13410.12970.76740.03241.1826143.548283.3661-12.8814
25.308-0.64041.28690.70140.11130.65370.1646-2.63110.77930.48610.1987-0.59890.0157-0.2725-0.31311.4162-0.35750.04262.8583-0.89171.9287222.9104128.91719.8539
35.07293.0824-1.13292.136-0.78220.58470.0308-0.7921-1.2238-0.0254-0.1622-0.91590.34480.26260.13281.21790.21230.02521.28130.02591.6187166.827271.7978-26.3993
40.86740.39370.48551.0304-1.10462.3758-1.3380.4985-0.3846-0.45250.931-0.0903-0.18840.41560.41591.8545-0.29270.30881.09180.31042.1009156.6417157.6805-34.5617
59.78351.4203-1.71422.4239-1.67812.0779-0.56810.41760.3851-1.7246-0.5011-0.58520.98130.12731.04392.2055-0.02240.60780.97280.10162.2064153.0954150.8427-37.2611
69.62942.37894.85769.72955.24274.27030.0436-1.5173-0.106-0.61410.14891.8198-0.3618-1.3577-0.12071.3977-0.34550.47941.007-0.12082.0796148.6319160.3254-20.078
74.514-1.85864.26769.75712.78516.965-0.6172-0.7619-0.1064-0.2827-0.6345-0.5891-0.01991.13311.10561.3882-0.09460.3641.29270.08951.4539166.2379162.7862-17.6458
89.60412.89952.33014.5938-0.96734.1678-0.035-0.87720.7624-0.19231.0775-0.4311-1.22351.2911-0.95160.9964-0.24190.5281.2643-0.62391.6217174.3846156.1031-6.4129
90.34790.18120.22750.15410.11460.1495-0.11820.74781.1006-0.02690.3934-1.8471-0.84581.4219-0.21352.1733-0.97140.63672.5701-0.68892.4188193.3282166.85962.4129
103.84.62961.9086.07721.18763.95790.12980.16480.30130.07960.7012-1.1765-0.49821.0222-0.85411.234-0.18540.53131.0509-0.4992.1215174.1648155.5079-10.7261
111.801-2.71580.74027.22460.0494.9609-0.1757-0.2326-0.2271-1.4810.55840.0881-0.09150.4046-0.18241.951-0.32890.69420.546-0.27382.0811157.3234151.8205-23.1106
123.9385-0.480.09855.09423.21383.3758-0.4650.38820.61950.0790.2918-0.398-1.30120.32810.04322.0418-0.32070.86330.59820.00172.4462158.0663167.8693-20.9053
131.03480.6995-1.3610.4709-0.91551.76720.08640.03360.50490.0610.5306-0.1472-0.75220.0187-0.47614.3398-0.57580.28081.0356-0.14823.4947163.3382174.6092-22.8155
140.35260.00110.80130.71080.53992.1464-0.0493-0.25390.3216-0.1576-0.00180.1972-0.084-0.74540.30951.6578-0.1330.11074.5291-2.04111.6074209.5626138.236527.8702
156.08660.315-0.47111.835-0.48650.15240.2333-2.35510.83760.4466-1.1348-0.65910.0290.53330.74931.3353-0.48870.30085.0573-0.29682.2079206.217144.002635.3483
164.1464-3.75781.03246.2804-1.68170.4506-0.589-2.0962-0.07921.89490.3588-0.7083-0.20370.93460.2683.3951-0.19120.36355.0977-0.1652.1068192.0987140.401245.0701
170.01610.0667-0.02640.2107-0.10150.04310.0273-0.16210.11550.68180.1262-0.1975-0.25370.3862-0.04312.55970.2697-0.45013.8579-0.81740.7245206.3767138.736646.8864
180.03940.1980.4552.14631.88335.5338-0.9541-1.45161.68310.9626-0.7945-0.6649-1.22340.38161.58732.5542-0.1604-0.60885.5808-0.51771.7735191.9058144.503431.2749
193.78020.4457-0.07455.6758-0.76614.42880.7151-0.67610.38070.91210.5680.97880.1526-0.5783-0.96131.2322-0.29570.19334.0232-0.31321.4403186.7401129.276719.1299
204.49045.7696-3.03957.4226-3.91362.06050.2677-1.66741.39520.9384-0.76140.3661-0.4784-0.43580.55040.9978-0.26060.01223.0521-1.37122.3533196.2088143.600610.4773
213.34213.6184-4.99855.2016-5.89468.1156-0.7703-2.4807-0.2486-0.49110.21150.40231.482-1.78650.29611.32120.2318-0.18364.3044-0.02071.1167194.9977124.983123.6029
225.94180.0942-1.36060.02590.30144.52711.33410.03610.3278-0.15440.12930.4697-0.4948-0.29-0.78750.55830.10410.28863.5846-0.66791.6263194.4469136.339817.2566
231.5094-1.3495-0.03181.63571.18283.7533-0.0201-0.8097-0.40670.86791.0038-0.31270.0305-0.2058-0.83452.62980.0036-0.35921.99420.00491.5974153.1324110.884237.5829
242.46192.06550.65964.4441-2.10282.85681.0221-1.81061.36661.1523-0.5719-0.592-0.38431.0616-0.46631.65010.04490.00821.5383-0.34321.1039159.0942112.521425.587
258.977-2.26014.30222.8345-3.87535.5220.05490.5776-0.7323-1.1491-0.6053-0.4131.85530.40910.47131.30090.2720.22381.0097-0.3151.2767138.5527105.478119.7354
264.1891-0.7822.0095.0777-1.21485.3560.3002-0.36930.53850.92440.20230.5948-0.3332-1.0712-0.47791.92120.02110.53131.26360.07230.9715131.8613106.867639.4319
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1125.81580.44335.60969.2182-0.41085.7302-0.437-0.6079-0.8640.546-0.89170.08181.1280.37361.08760.68510.06880.11970.97840.40111.4041137.876298.5288-21.8106
1132.56792.18922.00834.64315.91627.9238-1.1403-0.61080.1945-0.42760.98910.71750.4640.08750.24380.82980.15920.0060.91730.30921.5726127.754485.7798-33.6503
1148.18318.5445-1.52998.942-1.78352.27450.71241.1111-0.4633-0.72110.37051.42070.8167-1.0774-0.88861.22-0.0707-0.87771.79040.57712.3832116.14380.2332-46.7673
1154.83774.4092-1.11967.3531-5.17295.42830.3236-0.12171.06440.6154-0.3484-0.1254-2.745-1.07880.10830.91650.08090.13180.73970.24011.7995116.329384.8188-35.4181
1166.1664-4.79965.20873.7879-4.27466.2214-0.14330.33130.05011.1469-0.44860.2182-0.57310.55860.45971.0506-0.27440.20830.91080.07391.279117.757480.0599-36.9001
1176.265-4.5041-0.21395.0723-1.17624.97530.22130.5224-0.4269-0.12480.2994-0.4490.06730.6868-0.49331.4423-0.01290.16581.2161-0.2911.271138.002985.9101-45.222
1181.7918-3.56111.27969.4332-4.44432.7258-1.19-1.27242.85040.122-0.24030.0854-3.0030.43991.42291.773-0.22120.47641.465-0.63862.6898179.9836140.7853-64.2835
1193.36833.52751.61493.87852.83018.1377-0.28670.57031.4438-1.3384-0.5012-0.037-1.5998-0.30690.8271.65340.1972-0.09371.6510.44021.543173.0894132.729-76.0771
1204.33855.16074.03217.30114.39676.77030.57581.38541.7383-1.5409-0.1621-1.373-1.2540.8361-0.54791.12310.46260.72331.25660.75692.0853181.4305133.6157-74.9757
1214.4386-4.9571-3.76615.53524.20713.1997-0.2898-0.6097-0.2368-0.06720.4667-3.0975-0.20982.8354-0.28420.81030.0722-0.12681.6111-0.17811.4013186.8375128.9706-66.528
1227.6313-1.6239-0.77793.57333.24233.01210.1092-1.26570.35180.29580.1307-0.2214-0.00550.7361-0.15791.6028-0.06340.80951.649-0.20730.6626178.1643134.1995-61.0591
1237.8599-2.966-6.51931.76783.91348.66381.0176-0.07310.19160.137-0.03250.4068-0.4879-0.996-0.68851.2363-0.17510.38471.37710.62980.8062174.8062124.8529-69.432
1245.63940.23793.98080.43880.33476.092-0.52040.271-0.14710.0299-0.2448-0.6113-0.44851.32130.70421.7170.20780.30841.47140.54761.2551192.4045126.0094-72.0013
1253.15982.23973.44631.68331.77439.03430.33270.2824-0.4204-0.71430.77010.67611.2842-1.6431-1.21572.52091.3327-1.30783.6762-0.94442.2658252.627111.746628.2807
1261.2039-0.1007-0.78770.14580.07030.5118-0.9074-1.22751.02531.8352-0.6594-1.1522-0.22770.39641.3863.40891.3874-1.34774.8546-0.88652.7162251.898998.72242.1192
1270.0316-0.05590.06070.2098-0.35610.6784-0.41690.20672.3263-0.36880.1634-0.2208-1.63150.8560.25591.9459-0.4786-0.55832.85170.56024.2847252.505188.241438.759
1280.4237-1.35371.54884.8158-5.52776.3426-0.2905-1.5517-0.99210.5215-0.31360.78550.0005-0.52930.52381.6589-0.1888-0.02723.5920.35492.6886244.8084100.321731.9092
1295.44054.5931-0.24684.20561.1826.2080.347-1.1337-0.16490.0061-1.04380.45110.10010.67710.64231.83250.0046-0.59323.88780.71133.2922251.737995.814832.4613
1300.4351-0.60071.2442.2624-1.07784.0979-0.23570.17920.684-0.00970.0643-0.6729-0.35160.2420.21771.3567-0.0769-0.60293.46850.76613.1528248.572692.868426.3479
1317.5153-4.56115.13714.203-3.74163.78220.79393.80451.0167-2.2257-0.89530.3618-0.7416-0.51950.16622.42520.3301-0.81562.85681.31212.7606253.3203102.249225.2716
1329.1979-4.8460.87048.3748-5.25934.0495-0.9673-1.76280.45630.43460.1415-1.1596-0.94722.22580.71892.1501-0.0961-0.10653.08440.37351.7904241.927295.739116.3117
1334.57930.13874.23542.33550.78254.0528-0.3297-0.06850.45040.37170.51750.62530.30490.5768-0.26581.3952-0.20350.44540.80360.12641.7217113.337141.2647-15.4817
1346.06773.02020.31054.2759-0.17861.08760.4083-1.32190.22970.2352-0.36520.85830.9336-0.4652-0.00821.4889-0.00560.31560.70010.88051.7694100.296844.8115-26.5587
1355.0195-0.72193.06225.59922.78293.74780.29770.25730.4633-0.2019-0.84650.0937-0.15080.28190.47721.209-0.44630.08311.43850.58972.060499.336850.1838-35.7648
1364.7174-4.44083.96075.8616-2.08714.92780.1106-0.3709-1.19410.1326-0.23210.6740.5613-0.29510.05551.5942-0.61330.11832.4087-0.75363.9135252.0875124.86393.1901
1372.68761.2719-0.41525.6537-0.14680.18670.2616-1.51031.51080.6808-0.3054-0.0137-1.3530.66240.04152.297-0.3489-0.47871.8728-0.99722.5311251.8095131.41178.8063
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1chain 'A' and (resseq 5:920)A5 - 920
2X-RAY DIFFRACTION2chain 'A' and (resseq 921:1400)A921 - 1400
3X-RAY DIFFRACTION3chain 'A' and (resseq 1401:1544)A0
4X-RAY DIFFRACTION4chain 'B' and (resseq 7:25)B7 - 25
5X-RAY DIFFRACTION5chain 'B' and (resseq 26:43)B26 - 43
6X-RAY DIFFRACTION6chain 'B' and (resseq 44:63)B44 - 63
7X-RAY DIFFRACTION7chain 'B' and (resseq 64:87)B64 - 87
8X-RAY DIFFRACTION8chain 'B' and (resseq 88:121)B88 - 121
9X-RAY DIFFRACTION9chain 'B' and (resseq 122:131)B122 - 131
10X-RAY DIFFRACTION10chain 'B' and (resseq 132:180)B132 - 180
11X-RAY DIFFRACTION11chain 'B' and (resseq 181:207)B181 - 207
12X-RAY DIFFRACTION12chain 'B' and (resseq 208:226)B208 - 226
13X-RAY DIFFRACTION13chain 'B' and (resseq 227:240)B227 - 240
14X-RAY DIFFRACTION14chain 'C' and (resseq 2:50)C2 - 50
15X-RAY DIFFRACTION15chain 'C' and (resseq 51:70)C51 - 70
16X-RAY DIFFRACTION16chain 'C' and (resseq 71:82)C71 - 82
17X-RAY DIFFRACTION17chain 'C' and (resseq 83:101)C83 - 101
18X-RAY DIFFRACTION18chain 'C' and (resseq 102:112)C102 - 112
19X-RAY DIFFRACTION19chain 'C' and (resseq 113:169)C113 - 169
20X-RAY DIFFRACTION20chain 'C' and (resseq 170:182)C170 - 182
21X-RAY DIFFRACTION21chain 'C' and (resseq 183:193)C183 - 193
22X-RAY DIFFRACTION22chain 'C' and (resseq 194:207)C194 - 207
23X-RAY DIFFRACTION23chain 'D' and (resseq 2:34)D2 - 34
24X-RAY DIFFRACTION24chain 'D' and (resseq 35:68)D35 - 68
25X-RAY DIFFRACTION25chain 'D' and (resseq 69:99)D69 - 99
26X-RAY DIFFRACTION26chain 'D' and (resseq 100:194)D100 - 194
27X-RAY DIFFRACTION27chain 'D' and (resseq 195:209)D195 - 209
28X-RAY DIFFRACTION28chain 'E' and (resseq 5:16)E5 - 16
29X-RAY DIFFRACTION29chain 'E' and (resseq 17:27)E17 - 27
30X-RAY DIFFRACTION30chain 'E' and (resseq 28:50)E28 - 50
31X-RAY DIFFRACTION31chain 'E' and (resseq 51:63)E51 - 63
32X-RAY DIFFRACTION32chain 'E' and (resseq 64:79)E64 - 79
33X-RAY DIFFRACTION33chain 'E' and (resseq 80:103)E80 - 103
34X-RAY DIFFRACTION34chain 'E' and (resseq 104:127)E104 - 127
35X-RAY DIFFRACTION35chain 'E' and (resseq 128:141)E128 - 141
36X-RAY DIFFRACTION36chain 'E' and (resseq 142:154)E142 - 154
37X-RAY DIFFRACTION37chain 'F' and (resseq 1:10)F1 - 10
38X-RAY DIFFRACTION38chain 'F' and (resseq 11:15)F11 - 15
39X-RAY DIFFRACTION39chain 'F' and (resseq 16:32)F16 - 32
40X-RAY DIFFRACTION40chain 'F' and (resseq 33:42)F33 - 42
41X-RAY DIFFRACTION41chain 'F' and (resseq 43:47)F43 - 47
42X-RAY DIFFRACTION42chain 'F' and (resseq 48:56)F48 - 56
43X-RAY DIFFRACTION43chain 'F' and (resseq 57:68)F57 - 68
44X-RAY DIFFRACTION44chain 'F' and (resseq 69:81)F69 - 81
45X-RAY DIFFRACTION45chain 'F' and (resseq 82:92)F82 - 92
46X-RAY DIFFRACTION46chain 'F' and (resseq 93:101)F93 - 101
47X-RAY DIFFRACTION47chain 'G' and (resseq 2:11)G2 - 11
48X-RAY DIFFRACTION48chain 'G' and (resseq 12:35)G12 - 35
49X-RAY DIFFRACTION49chain 'G' and (resseq 36:69)G36 - 69
50X-RAY DIFFRACTION50chain 'G' and (resseq 70:78)G70 - 78
51X-RAY DIFFRACTION51chain 'G' and (resseq 79:92)G79 - 92
52X-RAY DIFFRACTION52chain 'G' and (resseq 93:110)G93 - 110
53X-RAY DIFFRACTION53chain 'G' and (resseq 111:129)G111 - 129
54X-RAY DIFFRACTION54chain 'G' and (resseq 130:144)G130 - 144
55X-RAY DIFFRACTION55chain 'G' and (resseq 145:156)G145 - 156
56X-RAY DIFFRACTION56chain 'H' and (resseq 1:19)H1 - 19
57X-RAY DIFFRACTION57chain 'H' and (resseq 20:42)H20 - 42
58X-RAY DIFFRACTION58chain 'H' and (resseq 43:62)H43 - 62
59X-RAY DIFFRACTION59chain 'H' and (resseq 63:95)H63 - 95
60X-RAY DIFFRACTION60chain 'H' and (resseq 96:116)H96 - 116
61X-RAY DIFFRACTION61chain 'H' and (resseq 117:138)H117 - 138
62X-RAY DIFFRACTION62chain 'I' and (resseq 2:32)I2 - 32
63X-RAY DIFFRACTION63chain 'I' and (resseq 33:40)I33 - 40
64X-RAY DIFFRACTION64chain 'I' and (resseq 41:69)I41 - 69
65X-RAY DIFFRACTION65chain 'I' and (resseq 70:88)I70 - 88
66X-RAY DIFFRACTION66chain 'I' and (resseq 89:106)I89 - 106
67X-RAY DIFFRACTION67chain 'I' and (resseq 107:128)I107 - 128
68X-RAY DIFFRACTION68chain 'J' and (resseq 3:12)J3 - 12
69X-RAY DIFFRACTION69chain 'J' and (resseq 13:29)J13 - 29
70X-RAY DIFFRACTION70chain 'J' and (resseq 30:42)J30 - 42
71X-RAY DIFFRACTION71chain 'J' and (resseq 43:49)J43 - 49
72X-RAY DIFFRACTION72chain 'J' and (resseq 50:71)J50 - 71
73X-RAY DIFFRACTION73chain 'J' and (resseq 72:84)J72 - 84
74X-RAY DIFFRACTION74chain 'J' and (resseq 85:94)J85 - 94
75X-RAY DIFFRACTION75chain 'J' and (resseq 95:100)J95 - 100
76X-RAY DIFFRACTION76chain 'K' and (resseq 11:34)K11 - 34
77X-RAY DIFFRACTION77chain 'K' and (resseq 35:52)K35 - 52
78X-RAY DIFFRACTION78chain 'K' and (resseq 53:75)K53 - 75
79X-RAY DIFFRACTION79chain 'K' and (resseq 76:86)K76 - 86
80X-RAY DIFFRACTION80chain 'K' and (resseq 87:99)K87 - 99
81X-RAY DIFFRACTION81chain 'K' and (resseq 100:110)K100 - 110
82X-RAY DIFFRACTION82chain 'K' and (resseq 111:126)K111 - 126
83X-RAY DIFFRACTION83chain 'L' and (resseq 5:12)L5 - 12
84X-RAY DIFFRACTION84chain 'L' and (resseq 13:22)L13 - 22
85X-RAY DIFFRACTION85chain 'L' and (resseq 23:32)L23 - 32
86X-RAY DIFFRACTION86chain 'L' and (resseq 33:69)L33 - 69
87X-RAY DIFFRACTION87chain 'L' and (resseq 70:101)L70 - 101
88X-RAY DIFFRACTION88chain 'L' and (resseq 102:128)L102 - 128
89X-RAY DIFFRACTION89chain 'M' and (resseq 2:14)M2 - 14
90X-RAY DIFFRACTION90chain 'M' and (resseq 15:66)M15 - 66
91X-RAY DIFFRACTION91chain 'M' and (resseq 67:94)M67 - 94
92X-RAY DIFFRACTION92chain 'M' and (resseq 95:119)M95 - 119
93X-RAY DIFFRACTION93chain 'N' and (resseq 2:11)N2 - 11
94X-RAY DIFFRACTION94chain 'N' and (resseq 12:21)N12 - 21
95X-RAY DIFFRACTION95chain 'N' and (resseq 22:31)N22 - 31
96X-RAY DIFFRACTION96chain 'N' and (resseq 32:40)N32 - 40
97X-RAY DIFFRACTION97chain 'N' and (resseq 41:61)N41 - 61
98X-RAY DIFFRACTION98chain 'O' and (resseq 2:49)O2 - 49
99X-RAY DIFFRACTION99chain 'O' and (resseq 50:73)O50 - 73
100X-RAY DIFFRACTION100chain 'O' and (resseq 74:88)O74 - 88
101X-RAY DIFFRACTION101chain 'P' and (resseq 1:8)P1 - 8
102X-RAY DIFFRACTION102chain 'P' and (resseq 9:23)P9 - 23
103X-RAY DIFFRACTION103chain 'P' and (resseq 24:33)P24 - 33
104X-RAY DIFFRACTION104chain 'P' and (resseq 34:52)P34 - 52
105X-RAY DIFFRACTION105chain 'P' and (resseq 53:61)P53 - 61
106X-RAY DIFFRACTION106chain 'P' and (resseq 62:67)P62 - 67
107X-RAY DIFFRACTION107chain 'P' and (resseq 68:76)P68 - 76
108X-RAY DIFFRACTION108chain 'P' and (resseq 77:83)P77 - 83
109X-RAY DIFFRACTION109chain 'Q' and (resseq 2:12)Q2 - 12
110X-RAY DIFFRACTION110chain 'Q' and (resseq 13:17)Q13 - 17
111X-RAY DIFFRACTION111chain 'Q' and (resseq 18:28)Q18 - 28
112X-RAY DIFFRACTION112chain 'Q' and (resseq 29:34)Q29 - 34
113X-RAY DIFFRACTION113chain 'Q' and (resseq 35:45)Q35 - 45
114X-RAY DIFFRACTION114chain 'Q' and (resseq 46:55)Q46 - 55
115X-RAY DIFFRACTION115chain 'Q' and (resseq 56:61)Q56 - 61
116X-RAY DIFFRACTION116chain 'Q' and (resseq 62:81)Q62 - 81
117X-RAY DIFFRACTION117chain 'Q' and (resseq 82:100)Q82 - 100
118X-RAY DIFFRACTION118chain 'R' and (resseq 19:24)R19 - 24
119X-RAY DIFFRACTION119chain 'R' and (resseq 25:36)R25 - 36
120X-RAY DIFFRACTION120chain 'R' and (resseq 37:43)R37 - 43
121X-RAY DIFFRACTION121chain 'R' and (resseq 44:52)R44 - 52
122X-RAY DIFFRACTION122chain 'R' and (resseq 53:59)R53 - 59
123X-RAY DIFFRACTION123chain 'R' and (resseq 60:75)R60 - 75
124X-RAY DIFFRACTION124chain 'R' and (resseq 76:88)R76 - 88
125X-RAY DIFFRACTION125chain 'S' and (resseq 2:12)S2 - 12
126X-RAY DIFFRACTION126chain 'S' and (resseq 13:25)S13 - 25
127X-RAY DIFFRACTION127chain 'S' and (resseq 26:30)S26 - 30
128X-RAY DIFFRACTION128chain 'S' and (resseq 31:40)S31 - 40
129X-RAY DIFFRACTION129chain 'S' and (resseq 41:52)S41 - 52
130X-RAY DIFFRACTION130chain 'S' and (resseq 53:66)S53 - 66
131X-RAY DIFFRACTION131chain 'S' and (resseq 67:71)S67 - 71
132X-RAY DIFFRACTION132chain 'S' and (resseq 72:81)S72 - 81
133X-RAY DIFFRACTION133chain 'T' and (resseq 8:45)T8 - 45
134X-RAY DIFFRACTION134chain 'T' and (resseq 46:75)T46 - 75
135X-RAY DIFFRACTION135chain 'T' and (resseq 76:106)T76 - 106
136X-RAY DIFFRACTION136chain 'U' and (resseq 2:8)U2 - 8
137X-RAY DIFFRACTION137chain 'U' and (resseq 9:25)U9 - 25

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