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- PDB-2zfc: X-ray crystal structure of an engineered N-terminal HIV-1 GP41 tr... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2zfc | ||||||
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Title | X-ray crystal structure of an engineered N-terminal HIV-1 GP41 trimer with enhanced stability and potency | ||||||
![]() | HIV-1 GP41 | ||||||
![]() | VIRAL PROTEIN / hiv-1 / gp41 | ||||||
Function / homology | Single alpha-helices involved in coiled-coils or other helix-helix interfaces - #170 / Single alpha-helices involved in coiled-coils or other helix-helix interfaces / Up-down Bundle / Mainly Alpha![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Dwyer, J.J. / Wilson, K.L. / Martin, K. / Seedorff, J.E. / Hasan, A. / Kim, H. | ||||||
![]() | ![]() Title: Design of an engineered N-terminal HIV-1 gp41 trimer with enhanced stability and potency Authors: Dwyer, J.J. / Wilson, K.L. / Martin, K. / Seedorff, J.E. / Hasan, A. / Medinas, R.J. / Davison, D.K. / Feese, M.D. / Richter, H.T. / Kim, H. / Matthews, T.J. / Delmedico, M.K. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 39.5 KB | Display | ![]() |
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PDB format | ![]() | 28.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 372.6 KB | Display | ![]() |
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Full document | ![]() | 373.8 KB | Display | |
Data in XML | ![]() | 3.7 KB | Display | |
Data in CIF | ![]() | 6.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein/peptide | Mass: 5558.464 Da / Num. of mol.: 3 / Source method: obtained synthetically / Details: synthetic peptide #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.78 Å3/Da / Density % sol: 55.74 % |
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Crystal grow | Temperature: 289 K / Method: vapor diffusion, sitting drop / pH: 5.6 Details: 10%(v/v) iso-propanol, 0.1M Na Citrate pH 5.6, 10%(w/v) PEG 4000, VAPOR DIFFUSION, SITTING DROP, temperature 289K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU RAXIS IV++ / Detector: IMAGE PLATE / Details: Osmic Blue |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.54 Å / Relative weight: 1 |
Reflection | Resolution: 1.5→50 Å / Num. obs: 28563 / % possible obs: 95.5 % / Redundancy: 5 % / Biso Wilson estimate: 24.9 Å2 / Rsym value: 0.046 / Net I/σ(I): 44 |
Reflection shell | Resolution: 1.5→1.55 Å / Mean I/σ(I) obs: 1.6 / Rsym value: 0.312 / % possible all: 68.6 |
-Phasing
Phasing | Method: ![]() |
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Processing
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Refinement | Method to determine structure: ![]()
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Displacement parameters | Biso mean: 27.739 Å2 | ||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.5→20 Å
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Refine LS restraints |
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LS refinement shell | Highest resolution: 1.5 Å / Rfactor Rfree: 0.266 / Rfactor Rwork: 0.221 |