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Yorodumi- PDB-2cgr: LOCAL AND TRANSMITTED CONFORMATIONAL CHANGES ON COMPLEXATION OF A... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2cgr | ||||||
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Title | LOCAL AND TRANSMITTED CONFORMATIONAL CHANGES ON COMPLEXATION OF AN ANTI-SWEETENER FAB | ||||||
Components |
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Keywords | IMMUNOGLOBULIN | ||||||
Function / homology | Function and homology information Immunoglobulin V-Type / Immunoglobulin V-set domain / Immunoglobulin V-set domain / Immunoglobulin subtype / Immunoglobulin / Immunoglobulin/major histocompatibility complex, conserved site / Immunoglobulins and major histocompatibility complex proteins signature. / Immunoglobulin C-Type / Immunoglobulin C1-set / Immunoglobulin C1-set domain ...Immunoglobulin V-Type / Immunoglobulin V-set domain / Immunoglobulin V-set domain / Immunoglobulin subtype / Immunoglobulin / Immunoglobulin/major histocompatibility complex, conserved site / Immunoglobulins and major histocompatibility complex proteins signature. / Immunoglobulin C-Type / Immunoglobulin C1-set / Immunoglobulin C1-set domain / Ig-like domain profile. / Immunoglobulin-like domain / Immunoglobulin-like domain superfamily / Immunoglobulins / Immunoglobulin-like fold / Immunoglobulin-like / Sandwich / Mainly Beta Similarity search - Domain/homology | ||||||
Biological species | Mus musculus (house mouse) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.2 Å | ||||||
Authors | Guddat, L.W. / Shan, L. / Edmundson, A.B. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1994 Title: Local and transmitted conformational changes on complexation of an anti-sweetener Fab. Authors: Guddat, L.W. / Shan, L. / Anchin, J.M. / Linthicum, D.S. / Edmundson, A.B. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2cgr.cif.gz | 94.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2cgr.ent.gz | 76.8 KB | Display | PDB format |
PDBx/mmJSON format | 2cgr.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/cg/2cgr ftp://data.pdbj.org/pub/pdb/validation_reports/cg/2cgr | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO L 8 / 2: CIS PROLINE - PRO L 100 / 3: CIS PROLINE - PRO L 146 / 4: CIS PROLINE - PRO H 150 / 5: CIS PROLINE - PRO H 192 |
-Components
#1: Antibody | Mass: 24123.807 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mus musculus (house mouse) / References: PIR: S16112, UniProt: A2P1G9*PLUS |
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#2: Antibody | Mass: 22903.502 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mus musculus (house mouse) / References: GenBank: 1613777 |
#3: Chemical | ChemComp-GAS / |
#4: Water | ChemComp-HOH / |
Sequence details | THE PROTEIN WAS SEQUENCED BY J.M. ANCHIN AND D.S.LINTHICUM. TEXAS A & M UNIVERSITY |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.96 Å3/Da / Density % sol: 58.48 % |
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Crystal grow | *PLUS Method: other / Details: Shan, L., (1993) J. Crystal Growth, 126, 229. |
-Data collection
Reflection | *PLUS Highest resolution: 2.2 Å / Lowest resolution: 20 Å / Num. all: 29286 / Num. obs: 24544 / % possible obs: 83.8 % / Observed criterion σ(I): 1 / Num. measured all: 126541 / Rmerge(I) obs: 0.0719 |
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Reflection shell | *PLUS Highest resolution: 2.2 Å / Lowest resolution: 2.3 Å / % possible obs: 58.8 % / Num. possible: 3524 / Num. unique obs: 2072 / Num. measured obs: 8432 / Rmerge(I) obs: 0.1794 |
-Processing
Software |
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Refinement | Resolution: 2.2→10 Å / σ(F): 2 /
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Refinement step | Cycle: LAST / Resolution: 2.2→10 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Rfactor obs: 0.214 / Rfactor Rwork: 0.214 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 29.6 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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LS refinement shell | *PLUS Highest resolution: 2.2 Å / Lowest resolution: 2.3 Å / Num. reflection Rfree: 2072 / Total num. of bins used: 8 / Rfactor obs: 0.214 |