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Open data
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Basic information
Entry | Database: PDB / ID: 1uz2 | ||||||
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Title | The Cys121Ser Mutant of Beta-Lactoglobulin | ||||||
![]() | BETA-LACTOGLOBULIN | ||||||
![]() | TRANSPORT PROTEIN / LIPOCALIN / BETA-BARREL / MILK / WHEY RETINOL-BINDING / ALLERGEN | ||||||
Function / homology | ![]() retinol binding / long-chain fatty acid binding / extracellular space / identical protein binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | McNae, I. / Jayat, D. / Haertle, T. / Holt, C. / Sawyer, L. | ||||||
![]() | ![]() Title: A recombinant C121S mutant of bovine beta-lactoglobulin is more susceptible to peptic digestion and to denaturation by reducing agents and heating. Authors: Jayat, D. / Gaudin, J.C. / Chobert, J.M. / Burova, T.V. / Holt, C. / McNae, I. / Sawyer, L. / Haertle, T. #1: ![]() Title: Crystal Structures of the Bovine Beta-Lactoglobulin in the Orthorhombic Space Group C2221: Structural Differences between Genetic Variants a and B and the Nature of Tanford Transition Authors: Oliveira, K.M.G. / Valente-Mesquita, V.L. / Botelho, M.M. / Sawyer, L. / Ferreira, S.T. / Polikarpov, I. #2: ![]() Title: Expression of Recombinant Wild Type and Mutant Beta-Lactoglobulin in the Yeast Pichia Pastoris Authors: Wilson, C. / Quarrie, L. / Allan, G.J. / Flint, D.J. / Sawyer, L. / Holt, C. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 47.7 KB | Display | ![]() |
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PDB format | ![]() | 33.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 422.6 KB | Display | ![]() |
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Full document | ![]() | 426.9 KB | Display | |
Data in XML | ![]() | 9.3 KB | Display | |
Data in CIF | ![]() | 12.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1qg5S S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 18371.199 Da / Num. of mol.: 1 / Mutation: YES Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Description: BETA-LACTOGLOBULIN IS NORMALLY OBTAINED FROM MILK. MATURE CODING SEQUENCE Variant: A VARIANT / Production host: ![]() |
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#2: Water | ChemComp-HOH / |
Sequence details | THE A VARIANT DIFFERS FROM THE EQUALLY COMMON B-VARIANT AT G64D AND A118V |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.093 Å3/Da / Density % sol: 39.42 % |
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Crystal grow | Method: vapor diffusion, hanging drop / pH: 7.5 Details: HANGING DROPS WITH 20 MG/ML PROTEIN PLUS APPROX 2M AMMONIUM SULPHATE, 10MM HEPES, PH 7.5 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC CCD / Detector: CCD / Date: Feb 15, 2003 / Details: MIRRORS |
Radiation | Monochromator: CRYSTAL / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.488 Å / Relative weight: 1 |
Reflection | Resolution: 1.95→46 Å / Num. obs: 11241 / % possible obs: 99.5 % / Redundancy: 5.7 % / Rmerge(I) obs: 0.076 / Net I/σ(I): 5.7 |
Reflection shell | Resolution: 1.95→2 Å / Rmerge(I) obs: 0.23 / Mean I/σ(I) obs: 2.6 / % possible all: 99.5 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1QG5 Resolution: 1.95→45.64 Å / Cor.coef. Fo:Fc: 0.945 / Cor.coef. Fo:Fc free: 0.914 / SU B: 4.567 / SU ML: 0.132 / Cross valid method: THROUGHOUT / ESU R: 0.21 / ESU R Free: 0.188 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS ADDED IN THEIR RIDING POSITIONS. AS USUAL WITH COW LACTOGLOBULIN STRUCTURES THERE ARE SEVERAL INDISTINCT SURFACE LOOPS PRINCIPALLY AROUND 64, 88, 114 AND AFTER 152. THE DISULPHIDE ...Details: HYDROGENS ADDED IN THEIR RIDING POSITIONS. AS USUAL WITH COW LACTOGLOBULIN STRUCTURES THERE ARE SEVERAL INDISTINCT SURFACE LOOPS PRINCIPALLY AROUND 64, 88, 114 AND AFTER 152. THE DISULPHIDE BRIDGE BETWEEN C66 AND C160 HAS VIRTUALLY NO ELECTRON DENSITY.
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: BABINET MODEL WITH MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 35.58 Å2
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Refinement step | Cycle: LAST / Resolution: 1.95→45.64 Å
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Refine LS restraints |
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