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- PDB-1bsy: STRUCTURAL BASIS OF THE TANFORD TRANSITION OF BOVINE BETA-LACTOGL... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1bsy | ||||||
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Title | STRUCTURAL BASIS OF THE TANFORD TRANSITION OF BOVINE BETA-LACTOGLOBULIN FROM CRYSTAL STRUCTURES AT THREE PH VALUES; PH 7.1 | ||||||
![]() | BETA-LACTOGLOBULIN | ||||||
![]() | TRANSPORT / BETA-LACTOGLOBULIN / PH-DEPENDENT CONFORMATION / LOOP MOVEMENT / TANFORD TRANSITION | ||||||
Function / homology | ![]() retinol binding / long-chain fatty acid binding / extracellular space / identical protein binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Qin, B.Y. / Bewley, M.C. / Creamer, L.K. / Baker, E.N. / Jameson, G.B. | ||||||
![]() | ![]() Title: Structural basis of the Tanford transition of bovine beta-lactoglobulin. Authors: Qin, B.Y. / Bewley, M.C. / Creamer, L.K. / Baker, H.M. / Baker, E.N. / Jameson, G.B. #1: ![]() Title: Structure Determination of Bovine Beta-Lactoglobulin Variants a and B Authors: Qin, B.Y. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 40.7 KB | Display | ![]() |
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PDB format | ![]() | 31.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 425 KB | Display | ![]() |
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Full document | ![]() | 427.1 KB | Display | |
Data in XML | ![]() | 8.8 KB | Display | |
Data in CIF | ![]() | 11.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 18387.264 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() |
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#2: Water | ChemComp-HOH / |
Source details | ISOLATED FIRST FROM COW'S MILK IN 1934 |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.62 Å3/Da / Density % sol: 35 % / Description: DATA WERE COLLECTED USING OSCILLATION METHOD | ||||||||||||||||||||
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Crystal grow | pH: 7.1 / Details: pH 7.1 | ||||||||||||||||||||
Crystal grow | *PLUS Method: vapor diffusion, hanging drop | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 298 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU / Detector: IMAGE PLATE / Date: May 8, 1997 / Details: MIRRORS |
Radiation | Monochromator: NI / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.24→15 Å / Num. obs: 9293 / % possible obs: 96.4 % / Observed criterion σ(I): 2 / Redundancy: 3.07 % / Biso Wilson estimate: 54.7 Å2 / Rmerge(I) obs: 0.038 / Rsym value: 0.038 / Net I/σ(I): 24.1 |
Reflection shell | Resolution: 2.24→2.28 Å / Redundancy: 3.07 % / Rmerge(I) obs: 0.54 / Mean I/σ(I) obs: 2 / Rsym value: 0.038 / % possible all: 95.6 |
Reflection | *PLUS Num. measured all: 283429 |
Reflection shell | *PLUS % possible obs: 95.6 % |
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Processing
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Refinement | Resolution: 2.24→15 Å / Rfactor Rfree error: 0.01 / Data cutoff high absF: 100000 / Data cutoff low absF: 0.01 / Cross valid method: THROUGHOUT / σ(F): 0
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Displacement parameters | Biso mean: 50.5 Å2
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Refine analyze | Luzzati coordinate error obs: 0.43 Å / Luzzati sigma a obs: 0.88 Å | ||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.24→15 Å
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LS refinement shell | Resolution: 2.24→2.34 Å / Rfactor Rfree error: 0.05 / Total num. of bins used: 8
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Software | *PLUS Name: ![]() | ||||||||||||||||||||
Refinement | *PLUS | ||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||
Refine LS restraints | *PLUS
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LS refinement shell | *PLUS Rfactor obs: 0.37 |