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Structure paper

タイトルRational fragment-based design of compounds targeting the PWWP domain of the HRP family.
ジャーナル・号・ページEur. J. Med. Chem., Vol. 280, Page 116960-116960, Year 2024
掲載日2024年8月29日 (構造データの登録日)
著者Vantieghem, T. / Aslam, N.A. / Osipov, E.M. / Akele, M. / Van Belle, S. / Beelen, S. / Drexler, M. / Paulovcakova, T. / Lux, V. / Fearon, D. ...Vantieghem, T. / Aslam, N.A. / Osipov, E.M. / Akele, M. / Van Belle, S. / Beelen, S. / Drexler, M. / Paulovcakova, T. / Lux, V. / Fearon, D. / Douangamath, A. / von Delft, F. / Christ, F. / Veverka, V. / Verwilst, P. / Van Aerschot, A. / Debyser, Z. / Strelkov, S.V.
リンクEur. J. Med. Chem. / PubMed:39461037
手法X線回折
解像度1.41 - 2.11 Å
構造データ

PDB-7hg0:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z46169212
手法: X-RAY DIFFRACTION / 解像度: 1.58 Å

PDB-7hg1:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1079512010
手法: X-RAY DIFFRACTION / 解像度: 1.81 Å

PDB-7hg2:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1401276297
手法: X-RAY DIFFRACTION / 解像度: 1.7 Å

PDB-7hg3:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z319891284
手法: X-RAY DIFFRACTION / 解像度: 1.45 Å

PDB-7hg4:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1696844792
手法: X-RAY DIFFRACTION / 解像度: 1.57 Å

PDB-7hg5:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z2142244288
手法: X-RAY DIFFRACTION / 解像度: 1.57 Å

PDB-7hg6:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z839706072
手法: X-RAY DIFFRACTION / 解像度: 1.52 Å

PDB-7hg7:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z46169164
手法: X-RAY DIFFRACTION / 解像度: 1.76 Å

PDB-7hg8:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z445856640
手法: X-RAY DIFFRACTION / 解像度: 1.67 Å

PDB-7hg9:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z131516158
手法: X-RAY DIFFRACTION / 解像度: 1.58 Å

PDB-7hga:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1980894300
手法: X-RAY DIFFRACTION / 解像度: 1.57 Å

PDB-7hgb:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z33297786
手法: X-RAY DIFFRACTION / 解像度: 1.52 Å

PDB-7hgc:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1428159350
手法: X-RAY DIFFRACTION / 解像度: 1.51 Å

PDB-7hgd:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z363071686
手法: X-RAY DIFFRACTION / 解像度: 1.65 Å

PDB-7hge:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z45527714
手法: X-RAY DIFFRACTION / 解像度: 1.77 Å

PDB-7hgf:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1262433643
手法: X-RAY DIFFRACTION / 解像度: 1.55 Å

PDB-7hgg:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z422396686
手法: X-RAY DIFFRACTION / 解像度: 1.61 Å

PDB-7hgh:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z26823525
手法: X-RAY DIFFRACTION / 解像度: 1.74 Å

PDB-7hgi:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z57475068
手法: X-RAY DIFFRACTION / 解像度: 1.71 Å

PDB-7hgj:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z751811134
手法: X-RAY DIFFRACTION / 解像度: 1.75 Å

PDB-7hgk:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z31721798
手法: X-RAY DIFFRACTION / 解像度: 1.59 Å

PDB-7hgl:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z137790394
手法: X-RAY DIFFRACTION / 解像度: 1.73 Å

PDB-7hgm:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z438067480
手法: X-RAY DIFFRACTION / 解像度: 1.61 Å

PDB-7hgn:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z54226006
手法: X-RAY DIFFRACTION / 解像度: 1.55 Å

PDB-7hgo:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z431807512
手法: X-RAY DIFFRACTION / 解像度: 1.44 Å

PDB-7hgp:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z19735067
手法: X-RAY DIFFRACTION / 解像度: 1.62 Å

PDB-7hgq:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z94597856
手法: X-RAY DIFFRACTION / 解像度: 1.76 Å

PDB-7hgr:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z104924088
手法: X-RAY DIFFRACTION / 解像度: 1.41 Å

PDB-7hgs:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z355202286
手法: X-RAY DIFFRACTION / 解像度: 1.51 Å

PDB-7hgt:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z354992234
手法: X-RAY DIFFRACTION / 解像度: 1.57 Å

PDB-7hgu:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z216450634
手法: X-RAY DIFFRACTION / 解像度: 1.67 Å

PDB-7hgv:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z103740620
手法: X-RAY DIFFRACTION / 解像度: 1.48 Å

PDB-7hgw:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1407673036
手法: X-RAY DIFFRACTION / 解像度: 1.59 Å

PDB-7hgx:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1362754425
手法: X-RAY DIFFRACTION / 解像度: 1.57 Å

PDB-7hgy:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z285782452
手法: X-RAY DIFFRACTION / 解像度: 1.61 Å

PDB-7hgz:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1509882419
手法: X-RAY DIFFRACTION / 解像度: 1.65 Å

PDB-7hh0:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z57390007
手法: X-RAY DIFFRACTION / 解像度: 1.6 Å

PDB-7hh1:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z53825177
手法: X-RAY DIFFRACTION / 解像度: 1.53 Å

PDB-7hh2:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1238477757
手法: X-RAY DIFFRACTION / 解像度: 1.78 Å

PDB-7hh3:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1245580425
手法: X-RAY DIFFRACTION / 解像度: 1.64 Å

PDB-7hh4:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1139246057
手法: X-RAY DIFFRACTION / 解像度: 1.49 Å

PDB-7hh5:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z168883358
手法: X-RAY DIFFRACTION / 解像度: 1.66 Å

PDB-7hh6:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z54633859
手法: X-RAY DIFFRACTION / 解像度: 1.71 Å

PDB-7hh7:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1003207278
手法: X-RAY DIFFRACTION / 解像度: 1.73 Å

PDB-7hh8:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1258992717
手法: X-RAY DIFFRACTION / 解像度: 1.81 Å

PDB-7hh9:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1250132788
手法: X-RAY DIFFRACTION / 解像度: 1.54 Å

PDB-7hha:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z53825020
手法: X-RAY DIFFRACTION / 解像度: 1.8 Å

PDB-7hhb:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1263529721
手法: X-RAY DIFFRACTION / 解像度: 1.78 Å

PDB-7hhc:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z31432964
手法: X-RAY DIFFRACTION / 解像度: 1.59 Å

PDB-7hhd:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z90526999
手法: X-RAY DIFFRACTION / 解像度: 1.57 Å

PDB-7hhe:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1203252645
手法: X-RAY DIFFRACTION / 解像度: 2.04 Å

PDB-7hhf:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1267773633
手法: X-RAY DIFFRACTION / 解像度: 1.86 Å

PDB-7hhg:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1741966151
手法: X-RAY DIFFRACTION / 解像度: 1.5 Å

PDB-7hhh:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1259335862
手法: X-RAY DIFFRACTION / 解像度: 1.69 Å

PDB-7hhi:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z805551440
手法: X-RAY DIFFRACTION / 解像度: 2.11 Å

PDB-7hhj:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z100642432
手法: X-RAY DIFFRACTION / 解像度: 1.78 Å

PDB-7hhk:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1247413608
手法: X-RAY DIFFRACTION / 解像度: 1.94 Å

PDB-7hhl:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1262327517
手法: X-RAY DIFFRACTION / 解像度: 1.71 Å

PDB-7hhm:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z234898257
手法: X-RAY DIFFRACTION / 解像度: 1.78 Å

PDB-7hhn:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z133632670
手法: X-RAY DIFFRACTION / 解像度: 1.77 Å

PDB-7hho:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z235361315
手法: X-RAY DIFFRACTION / 解像度: 1.76 Å

PDB-7hhp:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z31723394
手法: X-RAY DIFFRACTION / 解像度: 1.78 Å

PDB-7hhq:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1741815708
手法: X-RAY DIFFRACTION / 解像度: 1.6 Å

PDB-7hhr:
PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z57744712
手法: X-RAY DIFFRACTION / 解像度: 2.03 Å

PDB-9g91:
Crystal structure of HRP-2 PWWP domain in complex with compound 43
手法: X-RAY DIFFRACTION / 解像度: 1.78 Å

PDB-9g94:
Crystal structure of HRP-2 PWWP domain in complex with compound 32
手法: X-RAY DIFFRACTION / 解像度: 1.73 Å

PDB-9g96:
Crystal structure of HRP-2 PWWP domain in complex with compound 42
手法: X-RAY DIFFRACTION / 解像度: 1.94 Å

PDB-9grs:
Crystal structure of HRP-2 PWWP domain in complex with compound 8
手法: X-RAY DIFFRACTION / 解像度: 1.66 Å

PDB-9grt:
Crystal structure of HRP-2 PWWP domain in complex with compound 29
手法: X-RAY DIFFRACTION / 解像度: 1.64 Å

PDB-9gru:
Crystal structure of HRP-2 PWWP domain in complex with compound 30
手法: X-RAY DIFFRACTION / 解像度: 1.7 Å

PDB-9grv:
Crystal structure of HRP-2 PWWP domain in complex with compound 37
手法: X-RAY DIFFRACTION / 解像度: 1.55 Å

化合物

ChemComp-SO4:
SULFATE ION / 硫酸ジアニオン

ChemComp-EDO:
1,2-ETHANEDIOL / エチレングリコ-ル

PDB-1a3p:
ROLE OF THE 6-20 DISULFIDE BRIDGE IN THE STRUCTURE AND ACTIVITY OF EPIDERMAL GROWTH FACTOR, NMR, 20 STRUCTURES

ChemComp-HOH:
WATER

ChemComp-UWS:
6-methyl-2-[(3-methyl-1,2-oxazol-5-yl)methyl]pyridazin-3(2H)-one

PDB-1h97:
Trematode hemoglobin from Paramphistomum epiclitum

ChemComp-U0S:
(5S)-7-(pyrazin-2-yl)-2-oxa-7-azaspiro[4.4]nonane

ChemComp-ZQD:
3-[(2S)-1-(methanesulfonyl)pyrrolidin-2-yl]-5-methyl-1,2-oxazole

ChemComp-UXG:
1-(diphenylmethyl)azetidin-3-ol / 1-ベンズヒドリルアゼチジン-3-オ-ル

ChemComp-WV4:
N-ethyl-2-fluoro-4-(methylsulfonyl)aniline

ChemComp-2NU:
2-(4-bromanylpyrazol-1-yl)-~{N}-cyclopropyl-~{N}-methyl-ethanamide

ChemComp-EJQ:
~{N}-(4-fluorophenyl)-2-pyrrolidin-1-yl-ethanamide

ChemComp-VZP:
N-[(3R)-1,1-dioxo-1lambda~6~-thiolan-3-yl]-N-methyl-N'-propan-2-ylurea

PDB-1a3q:
HUMAN NF-KAPPA-B P52 BOUND TO DNA

ChemComp-TU6:
[4-methyl-6-(piperidin-1-yl)pyrimidin-2-yl]methanol

PDB-1a34:
SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEX

PDB-1aj5:
CALPAIN DOMAIN VI APO

PDB-1a3s:
HUMAN UBC9

ChemComp-X0S:
2-chloro-N-methylbenzene-1-sulfonamide

ChemComp-T0Y:
1-[(thiophen-3-yl)methyl]piperidin-4-ol

PDB-1a4b:
AZURIN MUTANT WITH MET 121 REPLACED BY HIS, PH 6.5 CRYSTAL FORM, DATA COLLECTED AT-180 DEGREES CELSIUS

PDB-1a4a:
AZURIN MUTANT WITH MET 121 REPLACED BY HIS, PH 6.5 CRYSTAL FORM, DATA COLLECTED AT 16 DEGREES CELSIUS

PDB-1a35:
HUMAN TOPOISOMERASE I/DNA COMPLEX

ChemComp-ZUG:
N,N-dimethylpyridine-3-sulfonamide / N,N-ジメチルピリジン-3-スルホンアミド

ChemComp-NW4:
3-cyclohexyl-1-(morpholin-4-yl)propan-1-one

ChemComp-WJ4:
4-[(5-chloro-1,2,3-thiadiazol-4-yl)methyl]morpholine

PDB-1am1:
ATP BINDING SITE IN THE HSP90 MOLECULAR CHAPERONE

ChemComp-NX7:
(2,6-difluorophenyl)(pyrrolidin-1-yl)methanone

ChemComp-8DH:
N-methyl-3-oxo-N-(propan-2-yl)piperazine-1-sulfonamide

ChemComp-I8G:
2-(4-fluorophenoxy)-1-(pyrrolidin-1-yl)ethan-1-one

ChemComp-K2S:
N,N,3,5-tetramethyl-1H-pyrazole-4-sulfonamide

PDB-1am6:
CARBONIC ANHYDRASE II INHIBITOR: ACETOHYDROXAMATE

PDB-1amx:
COLLAGEN-BINDING DOMAIN FROM A STAPHYLOCOCCUS AUREUS ADHESIN

PDB-1a3r:
FAB FRAGMENT (ANTIBODY 8F5) COMPLEXED WITH PEPTIDE FROM HUMAN RHINOVIRUS (SEROTYPE 2) VIRAL CAPSID PROTEIN VP2 (RESIDUES 156-170)

ChemComp-VVJ:
N-cycloheptyl-N-methylmethanesulfonamide

PDB-1a33:
PEPTIDYLPROLYL ISOMERASE, CYCLOPHILIN-LIKE DOMAIN FROM BRUGIA MALAYI

PDB-1a32:
RIBOSOMAL PROTEIN S15 FROM BACILLUS STEAROTHERMOPHILUS

PDB-1a31:
HUMAN RECONSTITUTED DNA TOPOISOMERASE I IN COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX

ChemComp-UVA:
N-methyl-2-(methylsulfonyl)aniline

ChemComp-NYV:
1-(propan-2-yl)-1H-imidazole-4-sulfonamide

ChemComp-RYP:
~{N}-methyl-1-pyridin-4-yl-methanamine / N-メチルピリジン-4-メタンアミン

ChemComp-VVG:
N-(2-fluorophenyl)ethanesulfonamide

PDB-1akb:
STRUCTURAL BASIS FOR THE CATALYTIC ACTIVITY OF ASPARTATE AMINOTRANSFERASE K258H LACKING ITS PYRIDOXAL-5'-PHOSPHATE-BINDING LYSINE RESIDUE

PDB-1a3x:
PYRUVATE KINASE FROM SACCHAROMYCES CEREVISIAE COMPLEXED WITH PG, MN2+ AND K+

PDB-1a39:
HUMICOLA INSOLENS ENDOCELLULASE EGI S37W, P39W DOUBLE-MUTANT

ChemComp-W0J:
(3R)-N-methyl-1-(pyridazin-3-yl)piperidin-3-amine

ChemComp-WO7:
1-(1,4-diazepan-1-yl)ethan-1-one / 1-アセチルヘキサヒドロ-1H-1,4-ジアゼピン

ChemComp-UUY:
2-[methyl(pyridin-2-yl)amino]ethan-1-ol / 2-(メチル2-ピリジニルアミノ)エタノ-ル

ChemComp-LJR:
1-cyclohexyl-N-methylmethanesulfonamide


化合物 画像なし

ChemComp-KF8:
Unknown entry

PDB-1a3w:
PYRUVATE KINASE FROM SACCHAROMYCES CEREVISIAE COMPLEXED WITH FBP, PG, MN2+ AND K+

ChemComp-TE0:
1-(ethanesulfonyl)piperidine-4-carboxylic acid

PDB-1a3u:
STAPHYLOCOCCAL NUCLEASE, CYCLOHEXANE THIOL DISULFIDE TO V23C VARIANT

ChemComp-SYX:
(4-methylpiperazin-1-yl)[(2R)-oxolan-2-yl]methanone

PDB-1a3v:
STAPHYLOCOCCAL NUCLEASE, CYCLOPENTANE THIOL DISULFIDE TO V23C VARIANT

PDB-1a38:
14-3-3 PROTEIN ZETA BOUND TO R18 PEPTIDE

PDB-1a36:
TOPOISOMERASE I/DNA COMPLEX

ChemComp-W1A:
N-[(piperidin-4-yl)methyl]methanesulfonamide

PDB-1a3t:
STAPHYLOCOCCAL NUCLEASE, V23C VARIANT, COMPLEX WITH 2-FLUOROETHANE THIOL AND 3',5'-THYMIDINE DIPHOSPHATE

PDB-1h9v:
Human Fc-gamma-Receptor IIa (FcgRIIa), monoclinic

ChemComp-WJ7:
2-bromo-4-fluoro-N,N-dimethylbenzamide

ChemComp-LPU:
1-(methanesulfonyl)piperidin-4-ol

PDB-1a37:
14-3-3 PROTEIN ZETA BOUND TO PS-RAF259 PEPTIDE

ChemComp-UWD:
N-methyl-1-([1,2,4]triazolo[4,3-a]pyridin-3-yl)methanamine

PDB-1a30:
HIV-1 PROTEASE COMPLEXED WITH A TRIPEPTIDE INHIBITOR

PDB-1h9u:
The structure of the human retinoid-X-receptor beta ligand binding domain in complex with the specific synthetic agonist LG100268

PDB-1a3z:
REDUCED RUSTICYANIN AT 1.9 ANGSTROMS

PDB-1a3y:
ODORANT BINDING PROTEIN FROM NASAL MUCOSA OF PIG

ChemComp-YEB:
N,N-dimethylmorpholine-4-sulfonamide

PDB-1ii3:
Structure of S. nuclease quintuple mutant V23I/V66L/I72L/I92L/V99L

PDB-1d73:
Unknown entry

PDB-1ii2:
Crystal Structure of Phosphoenolpyruvate Carboxykinase (PEPCK) from Trypanosoma cruzi

ChemComp-DMS:
DIMETHYL SULFOXIDE / 2-チアプロパン2-オキシド / DMSO, 沈殿剤*YM

PDB-1h6y:
The role of conserved amino acids in the cleft of the C-terminal family 22 carbohydrate binding module of Clostridium thermocellum Xyn10B in ligand binding

ChemComp-BYZ:
4-bromo-1H-pyrazole / 4-ブロモ-1H-ピラゾ-ル

ChemComp-PYZ:
4-IODOPYRAZOLE / 4-ヨ-ド-1H-ピラゾ-ル

ChemComp-HHN:
5-bromanylpyrimidine / 5-ブロモピリミジン

由来
  • homo sapiens (ヒト)
キーワードGENE REGULATION / Inhibitor / Fragment screening / Epigenetic reader / methyllysine / PWWP / Diamond Light Source / I04-1 / PanDDA / XChem

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外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見文献

EMDB/PDB/SASBDBから引用されている文献のデータベース

  • EMDB/PDB/SASBDBのエントリから引用されている文献のデータベースです
  • Pubmedのデータを利用しています

関連情報:EMDB / PDB / SASBDB / 万見 (Yorodumi) / EMN文献 / 新しいEM Navigatorと万見の変更点

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