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Structure paper

TitleSAD phasing using iodide ions in a high-throughput structural genomics environment.
Journal, issue, pagesJ Struct Funct Genomics, Vol. 12, Page 83-95, Year 2011
Publish dateOct 15, 2009 (structure data deposition date)
AuthorsAbendroth, J. / Gardberg, A.S. / Robinson, J.I. / Christensen, J.S. / Staker, B.L. / Myler, P.J. / Stewart, L.J. / Edwards, T.E.
External linksJ Struct Funct Genomics / PubMed:21359836
MethodsX-ray diffraction
Resolution1.95 - 2.25 Å
Structure data

PDB-3k9g:
CRYSTAL STRUCTURE OF A PLASMID PARTITION PROTEIN FROM BORRELIA BURGDORFERI AT 2.25A RESOLUTION, iodide soak
Method: X-RAY DIFFRACTION / Resolution: 2.25 Å

PDB-3km3:
Crystal structure of eoxycytidine triphosphate deaminase from anaplasma phagocytophilum at 2.1A resolution
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-3kw3:
Crystal structure of alanine racemase from Bartonella henselae with covalently bound pyridoxal phosphate
Method: X-RAY DIFFRACTION / Resolution: 2.04 Å

PDB-3luz:
Crystal structure of extragenic suppressor protein suhB from Bartonella henselae, via combined iodide SAD molecular replacement
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-3men:
Crystal structure of acetylpolyamine aminohydrolase from Burkholderia pseudomallei, iodide soak
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-3njb:
Crystal structure of enoyl-coa hydratase from Mycobacterium smegmatis, iodide soak
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-3o2e:
Crystal structure of a bol-like protein from babesia bovis
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

PDB-3oib:
Crystal structure of a putative ACYL-COA Dehydrogenase from mycobacterium smegmatis, Iodide soak
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-3p96:
Crystal structure of Phosphoserine phosphatase SerB from Mycobacterium avium, native form
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-3pfd:
Crystal structure of an Acyl-CoA dehydrogenase from Mycobacterium thermoresistibile bound to reduced flavin adenine dinucleotide solved by combined iodide ion SAD MR
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-3pm6:
Crystal structure of a putative fructose-1,6-biphosphate aldolase from Coccidioides immitis solved by combined SAD MR
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

Chemicals

ChemComp-NA:
Unknown entry

ChemComp-IOD:
IODIDE ION / Iodide

ChemComp-HOH:
WATER / Water

ChemComp-MG:
Unknown entry

ChemComp-ZN:
Unknown entry

ChemComp-SO4:
SULFATE ION / Sulfate

ChemComp-K:
Unknown entry

ChemComp-EDO:
1,2-ETHANEDIOL / Ethylene glycol

ChemComp-FDA:
DIHYDROFLAVINE-ADENINE DINUCLEOTIDE

ChemComp-CL:
Unknown entry / Chloride

Source
  • borrelia burgdorferi (Lyme disease spirochete)
  • anaplasma phagocytophilum (agent of human granulocytic ehrlichiosis)
  • bartonella henselae (bacteria)
  • burkholderia pseudomallei 1710b (bacteria)
  • mycobacterium smegmatis (bacteria)
  • babesia bovis (eukaryote)
  • mycobacterium avium (bacteria)
  • mycobacterium thermoresistibile (bacteria)
  • coccidioides immitis (fungus)
KeywordsBIOSYNTHETIC PROTEIN / SSGCID / SBRI / DECODE BIOSTRUCTURES / UW / NIH / NIAID / BORELLIA BURGDORFERI / PLASMID PARTITION PROTEIN / IODIDE / SAD PHASING / Structural Genomics / Seattle Structural Genomics Center for Infectious Disease / HYDROLASE / DECODE / DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE / ANAPLASMA PHAGOCYTOPHILUM / IODIDE PHASING / Nucleotide metabolism / ISOMERASE / iodide soak / alanine racemase / LLP / cat-scratch disease / Bartonella / cat scratch disease / Seattle Structural Genomics Center for Infectious Disease (SSGCID) / ACETYLPOLYAMINE AMINOHYDROLASE / HISTONE DEACETYLASE / LYASE / ENOYL-COA HYDRATASE / iodide SAD / UNKNOWN FUNCTION / Babesia bovis / SAD / BOL like protein / OXIDOREDUCTASE / ACYL-COA DEHYDROGENASE / MYCOBACERIUM SMEGMATIS / deydrogenase / Phosphoserine phosphatase SerB / dehydrogenase / de novo phase determination / iodide ion SAD / acyl coA dehydrogenase / reduced flavin adenine dinucleotide / FAD / fatty acid metabolism / coccidioidomycosis / Coccidioides / Valley Fever / immitis / posadasii / fructose-1 / 6-bisphosphate aldolase / zinc-containing enzyme / pathogenic fungus

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